Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Chitinophagia
Order
Chitinophagales
Family
Chitinophagaceae
Genus
Chitinophaga
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Chitinophagia |
| Order | Chitinophagales |
| Family | Chitinophagaceae |
| Genus | Chitinophaga |
| Species | Chitinophaga rupis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2199289 bp
Thymine Count
2199880 bp
Guanine Count
1998172 bp
Cytosine Count
1989318 bp
Genome Length
8387119 bp
Protein-coding Genes
6501 genes
Non-Coding Genes
64 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488505_107156 | Not Available | Negative | 6059060 - 6060265 | 45651.4 |
| uncharacterized conserved protein | SAMN04488505_107157 | Not Available | Negative | 6060343 - 6060690 | 12537.0 |
| small-conductance mechanosensitive channel | SAMN04488505_107158 | Not Available | Negative | 6060796 - 6061623 | 30726.8 |
| phosphatidylglycerol lysyltransferase | SAMN04488505_107159 | Not Available | Positive | 6061868 - 6064447 | 96244.0 |
| hypothetical protein | SAMN04488505_107160 | Not Available | Negative | 6064629 - 6064793 | 6283.38 |
| virulence protein (virj) | SAMN04488505_107161 | Not Available | Positive | 6064942 - 6065634 | 25340.8 |
| hth domain-containing protein | SAMN04488505_107162 | Not Available | Positive | 6066490 - 6066768 | 10881.4 |
| alpha-l-fucosidase | SAMN04488505_107163 | Not Available | Positive | 6068539 - 6069912 | 53101.3 |
| dna-binding response regulator, narl/fixj family, contains rec and hth domains | SAMN04488505_107164 | Not Available | Positive | 6070409 - 6070999 | 21639.0 |
| rna polymerase sigma factor, sigma-70 family | SAMN04488505_107165 | Not Available | Positive | 6071200 - 6071793 | 22991.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
