Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Chitinophagia
Order
Chitinophagales
Family
Chitinophagaceae
Genus
Chitinophaga
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Chitinophagia |
| Order | Chitinophagales |
| Family | Chitinophagaceae |
| Genus | Chitinophaga |
| Species | Chitinophaga rupis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2199289 bp
Thymine Count
2199880 bp
Guanine Count
1998172 bp
Cytosine Count
1989318 bp
Genome Length
8387119 bp
Protein-coding Genes
6501 genes
Non-Coding Genes
64 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidoglycan/lps o-acetylase oafa/yrhl, contains acyltransferase and sgnh-hydrolase domains | SAMN04488505_107106 | Not Available | Positive | 5990729 - 5991910 | 44499.4 |
| hypothetical protein | SAMN04488505_107107 | Not Available | Positive | 5991998 - 5992246 | 9463.35 |
| pare toxin of type ii toxin-antitoxin system, parde | SAMN04488505_107108 | Not Available | Positive | 5992243 - 5992545 | 12130.7 |
| protein of unknown function | SAMN04488505_107109 | Not Available | Positive | 5992639 - 5995665 | 113685.0 |
| rhamnogalacturonyl hydrolase yesr | SAMN04488505_107110 | Not Available | Negative | 5995948 - 5997093 | 43071.5 |
| 1-phosphatidylinositol phosphodiesterase | SAMN04488505_107111 | Not Available | Negative | 5997140 - 5998192 | 39639.6 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488505_107112 | Not Available | Positive | 5998522 - 5999313 | 30755.1 |
| fecr family protein | SAMN04488505_107113 | Not Available | Positive | 5999414 - 6000601 | 43417.9 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488505_107114 | Not Available | Positive | 6000870 - 6004325 | 125553.0 |
| starch-binding associating with outer membrane | SAMN04488505_107115 | Not Available | Positive | 6004349 - 6005950 | 58139.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
