Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Chitinophagia
Order
Chitinophagales
Family
Chitinophagaceae
Genus
Chitinophaga
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Chitinophagia |
| Order | Chitinophagales |
| Family | Chitinophagaceae |
| Genus | Chitinophaga |
| Species | Chitinophaga rupis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2199289 bp
Thymine Count
2199880 bp
Guanine Count
1998172 bp
Cytosine Count
1989318 bp
Genome Length
8387119 bp
Protein-coding Genes
6501 genes
Non-Coding Genes
64 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chorismate synthase | SAMN04488505_103620 | Not Available | Negative | 4087737 - 4088729 | 34981.9 |
| 3-phosphoshikimate 1-carboxyvinyltransferase | SAMN04488505_103621 | Not Available | Negative | 4088791 - 4090068 | 45488.9 |
| 3-dehydroquinate synthase | SAMN04488505_103622 | Not Available | Negative | 4090113 - 4091138 | 38427.6 |
| 3-deoxy-d-arabinoheptulosonate-7-phosphate synthase | SAMN04488505_103623 | Not Available | Negative | 4091217 - 4092314 | 40986.5 |
| prephenate dehydrogenase | SAMN04488505_103624 | Not Available | Negative | 4092462 - 4093304 | 31153.2 |
| aspartate/methionine/tyrosine aminotransferase | SAMN04488505_103625 | Not Available | Negative | 4093322 - 4094488 | 43408.3 |
| prephenate dehydratase | SAMN04488505_103626 | Not Available | Negative | 4094492 - 4095316 | 30252.5 |
| hypothetical protein | SAMN04488505_103627 | Not Available | Negative | 4096399 - 4096623 | 7305.43 |
| rna polymerase sigma factor, sigma-70 family | SAMN04488505_103628 | Not Available | Positive | 4096753 - 4097325 | 22535.0 |
| serine protease, s1-c subfamily, contains c-terminal pdz domain | SAMN04488505_103629 | Not Available | Positive | 4097369 - 4098460 | 40484.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
