Chitinophaga rupis

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga rupis is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolic characteristics. This organism belongs to the phylum Bacteroidetes and is notable for its ability to thrive in oxygen-rich environments. The Gram-negative nature of C. rupis indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical for this group of bacteria and may confer specific advantages in its ecological niche. The rod shape of C. rupis is a common morphology among many bacteria, which can influence its motility and interaction with its environment. As an aerobic microbe, C. rupis relies on oxygen for its metabolic processes, which may play a critical role in its ecological adaptations. This trait suggests that C. rupis may be involved in specific biogeochemical cycles where oxygen availability is a determining factor. Interestingly, the presence of C. rupis in various environments may indicate its role in the degradation of chitin, a biopolymer found in the exoskeletons of arthropods and in fungal cell walls. This ability to degrade chitin could have significant implications for nutrient cycling in ecosystems, particularly in soil and marine environments where chitinous materials are abundant. Thus, C. rupis may contribute to the decomposition of organic matter and the recycling of nutrients in its habitat, highlighting its ecological significance in maintaining ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga rupis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga rupis strain DSM 21039 genome assembly, contig:

Gene Summary

Adenine Count

2199289 bp

Thymine Count

2199880 bp

Guanine Count

1998172 bp

Cytosine Count

1989318 bp

Genome Length

8387119 bp

Protein-coding Genes

6501 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
delta-1-pyrroline-5-carboxylate dehydrogenaseSAMN04488505_102912Not AvailablePositive2993148 - 299479160001.5
pap2 superfamily proteinSAMN04488505_102913Not AvailableNegative2994730 - 299560532517.1
nad-dependent deacetylaseSAMN04488505_102914Not AvailablePositive2995725 - 299641425551.8
hypothetical proteinSAMN04488505_102915Not AvailableNegative2996443 - 299837170720.8
saccharopine dehydrogenase nadp binding domain-containing proteinSAMN04488505_102916Not AvailableNegative2998489 - 299981450258.2
dna gyrase subunit aSAMN04488505_102917Not AvailablePositive3000423 - 300299996651.0
hypothetical proteinSAMN04488505_102918Not AvailablePositive3003177 - 300444247125.8
lysozymeSAMN04488505_102919Not AvailableNegative3004509 - 300518025405.7
hypothetical proteinSAMN04488505_102920Not AvailableNegative3005364 - 30055436372.86
signal transduction histidine kinaseSAMN04488505_102921Not AvailableNegative3005873 - 300807482445.0

Displaying genes 2371 – 2380 of 6565 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.