Chitinophaga rupis

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga rupis is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolic characteristics. This organism belongs to the phylum Bacteroidetes and is notable for its ability to thrive in oxygen-rich environments. The Gram-negative nature of C. rupis indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical for this group of bacteria and may confer specific advantages in its ecological niche. The rod shape of C. rupis is a common morphology among many bacteria, which can influence its motility and interaction with its environment. As an aerobic microbe, C. rupis relies on oxygen for its metabolic processes, which may play a critical role in its ecological adaptations. This trait suggests that C. rupis may be involved in specific biogeochemical cycles where oxygen availability is a determining factor. Interestingly, the presence of C. rupis in various environments may indicate its role in the degradation of chitin, a biopolymer found in the exoskeletons of arthropods and in fungal cell walls. This ability to degrade chitin could have significant implications for nutrient cycling in ecosystems, particularly in soil and marine environments where chitinous materials are abundant. Thus, C. rupis may contribute to the decomposition of organic matter and the recycling of nutrients in its habitat, highlighting its ecological significance in maintaining ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga rupis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga rupis strain DSM 21039 genome assembly, contig:

Gene Summary

Adenine Count

2199289 bp

Thymine Count

2199880 bp

Guanine Count

1998172 bp

Cytosine Count

1989318 bp

Genome Length

8387119 bp

Protein-coding Genes

6501 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
endonuclease vSAMN04488505_102592Not AvailablePositive2557790 - 255845824598.7
cubico group peptidase, beta-lactamase class c familySAMN04488505_102593Not AvailableNegative2558467 - 255964544148.0
uncharacterized conserved protein ybjt, contains nad(p)-binding and duf2867 domainsSAMN04488505_102594Not AvailableNegative2559790 - 256068032961.8
transcriptional regulator, arac family with amidase-like domainSAMN04488505_102595Not AvailablePositive2560788 - 256177437606.4
nucleoside-diphosphate-sugar epimeraseSAMN04488505_102596Not AvailableNegative2561732 - 256255629765.8
transglutaminase-like enzyme, putative cysteine proteaseSAMN04488505_102597Not AvailableNegative2562698 - 256349829674.7
hypothetical proteinSAMN04488505_102598Not AvailablePositive2563597 - 25638037786.09
glycosyl hydrolase catalytic coreSAMN04488505_102599Not AvailableNegative2564063 - 256493232486.6
tonb family c-terminal domain-containing proteinSAMN04488505_102600Not AvailableNegative2565025 - 256600236868.1
hypothetical proteinSAMN04488505_102601Not AvailablePositive2566092 - 256644213122.5

Displaying genes 2051 – 2060 of 6565 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.