Methanocaldococcus fervens AG86

Gram-negativeCocciMotileAnaerobe

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Methanococci

Order

Methanococcales

Family

Methanocaldococcaceae

Genus

Methanocaldococcus

Description

Methanocaldococcus fervens (strain DSM 4213 / JCM 157852 / AG86) is a thermophilic archaeon, originally isolated from a core sample from a deep sea hydrothermal vent in the Guayamas Basin of the Gulf of California. M. fervens is methanogenic and piezophilic. (HAMAP: METFA)

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassMethanococci
OrderMethanococcales
FamilyMethanocaldococcaceae
GenusMethanocaldococcus
SpeciesMethanocaldococcus fervens
StrainAG86

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Methanocaldococcus fervens AG86
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeHyperthermophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceLithotroph - Autotroph
PathogenicityNo

Genome Summary

Methanocaldococcus fervens AG86, complete sequence.

Gene Summary

Adenine Count

504092 bp

Thymine Count

502632 bp

Guanine Count

240763 bp

Cytosine Count

237574 bp

Genome Length

1485061 bp

Protein-coding Genes

1583 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinMEFER_RS00355Not AvailablePositive70472 - 7135934110.9
mind/para family proteinMEFER_RS00360Not AvailableNegative71354 - 7212428177.4
winged helix-turn-helix transcriptional regulatorMEFER_RS00365Not AvailableNegative72135 - 7245511995.6
pua domain-containing proteinMEFER_RS00370Not AvailablePositive72647 - 7312618601.9
hypothetical proteinMEFER_RS00375Not AvailablePositive73166 - 7396331390.7
nad(p)-binding proteinMEFER_RS00380Not AvailablePositive73977 - 7537752624.6
nog1 family proteinMEFER_RS00385Not AvailableNegative75330 - 7634938784.8
duf126 domain-containing proteinMEFER_RS00390Not AvailableNegative76422 - 7681113695.9
aspartate carbamoyltransferase regulatory subunitMEFER_RS00395Not AvailableNegative76902 - 7734216691.0
cbs domain-containing proteinMEFER_RS00400Not AvailableNegative77390 - 7864647269.6

Displaying genes 71 – 80 of 1661 in total

Metabolites

101 records
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Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm00016962-heptyl-3-hydroxy-4(1H)-quinoloneC16H21NO2Chemical structure of 2-heptyl-3-hydroxy-4(1H)-quinoloneNot available
Average259.349Da
Monoisotopic259.15722892Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002593(2E)-dodecenoyl-CoAC33H52N7O17P3SChemical structure of (2E)-dodecenoyl-CoA1066-12-2
Average943.789Da
Monoisotopic943.2353235Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm00032005,6,7,8-tetrahydromethanopterinC30H45N6O16PChemical structure of 5,6,7,8-tetrahydromethanopterinNot available
Average776.6827Da
Monoisotopic776.2629659Da
BASm00032075-methyl-5,6,7,8-tetrahydromethanopterinC31H44N6O16PChemical structure of 5-methyl-5,6,7,8-tetrahydromethanopterinNot available
Average787.694Da
Monoisotopic787.2567871Da
BASm0003462(2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinateC13H19N4O12PChemical structure of (2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinate3031-95-6
Average454.2833Da
Monoisotopic454.0737086Da
BASm0003631(1R,6R)-6-hydroxy-2-succinyl-cyclohexa-2,4-diene-1-carboxylateC11H10O6Chemical structure of (1R,6R)-6-hydroxy-2-succinyl-cyclohexa-2,4-diene-1-carboxylateNot available
Average238.196Da
Monoisotopic238.0488352Da
BASm0003763(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphateC11H12NO6PChemical structure of (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphateNot available
Average285.1898Da
Monoisotopic285.0402236Da

Displaying 1–10 of 101 metabolites

Health Effects

No health effects information available for this bacterium.