Bilophila wadsworthia 3_1_6

Gram-negativeAnaerobe

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfovibrionaceae

Genus

Bilophila

Description

Bilophila wadsworthia 3_1_6 is a gram-negative, rod-shaped bacterium that thrives in mesophilic temperatures, acting as a chemoheterotroph and exhibiting obligate anaerobic behavior. This microorganism is predominantly found in the human gastrointestinal tract, particularly in the large intestine, where it aids in the digestion of complex carbohydrates and the production of short-chain fatty acids. The gram-negative staining characteristic indicates that Bilophila wadsworthia has a thin peptidoglycan layer surrounded by an outer membrane, which contains lipopolysaccharides that contribute to its pathogenic potential and immune evasion. As a rod-shaped bacterium, it has a streamlined morphology that allows efficient movement and colonization within the gut environment. Being mesophilic, it prefers moderate temperature conditions, typically around 30-37°C, which aligns with the typical human body temperature, providing an optimal growth environment. As a chemoheterotroph, Bilophila wadsworthia derives its energy from organic compounds, utilizing various substrates found in the gut, including dietary fibers. Its obligate anaerobic nature means that it thrives in environments devoid of oxygen, relying on fermentation pathways to metabolize organic materials, which is essential for maintaining the gut microbiota balance and overall digestive health. Bilophila wadsworthia has gained attention due to its association with certain gastrointestinal diseases, including inflammatory bowel disease and colorectal cancer. This microbe plays a significant role in gut ecology, with its metabolic activities influencing the overall composition of gut microbiota. Interestingly, research has shown that changes in the abundance of Bilophila wadsworthia can correlate with dietary shifts, emphasizing the interconnection between diet, gut health, and microbiome dynamics.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusBilophila
SpeciesBilophila wadsworthia
Strain3_1_6

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bilophila wadsworthia 3_1_6


Gene Summary

Adenine Count

895639 bp

Thymine Count

891031 bp

Guanine Count

1301189 bp

Cytosine Count

1303235 bp

Genome Length

4391094 bp

Protein-coding Genes

3643 genes

Non-Coding Genes

221 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Tail fiber proteinHMPREF0179_05056Not Available-1 - 123042870.7
Hypothetical proteinHMPREF0179_01851Not Available-1422 - 208724462.4
Gp61 putative baseplate proteinHMPREF0179_01852Not Available-2084 - 324439998.4
Hypothetical proteinHMPREF0179_01853Not Available-3244 - 359712940.2
Baseplate assembly proteinHMPREF0179_01854Not Available-3594 - 432524750.2
Hypothetical proteinHMPREF0179_01855Not Available-4325 - 529334218.9
Hypothetical proteinHMPREF0179_01856Not Available-5286 - 559110728.0
Hypothetical proteinHMPREF0179_01857Not Available-5635 - 615619128.9
Tail tape measure proteinHMPREF0179_01858Not Available-6153 - 889789164.1
hypothetical proteinHMPREF0179_01859Not Available-8897 - 90495754.96

Displaying genes 1 – 10 of 3864 in total

Metabolites

321 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00011795-hydroxyisourateC5H4N4O4Chemical structure of 5-hydroxyisourateNot available
Average184.1097Da
Monoisotopic184.0232546Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001463alpha-L-rhamnoseC6H12O5Chemical structure of alpha-L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.068473494Da

Displaying 1–10 of 321 metabolites