Sulfurimonas autotrophica DSM 16294

Gram-negativeRodMotileAerobic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Sulfurimonadaceae

Genus

Sulfurimonas

Description

Sulfurimonas autotrophica (strain ATCC BAA-671 / DSM 16294 / JCM 11897 / OK10) is a mesophilic, sulfur- and thiosulfate-oxidizing, Gram-negative bacterium isolated from deep-sea sediments at the Hatoma Knoll in the Mid-Okinawa Trough hydrothermal field. Cells are short rods, each being motile by means of a single polar flagellum. Sulfurimonas autotrophica grows between 10-40 degrees Celsius with an optimum at 25 degrees Celsius and pH between 4.5-9.0 with an optimum pH 6.5. It grows chemolithoautotrophically with elemental sulfur, sulfide and thiosulfate as sole electron donors and oxygen as electron acceptor. Molecular hydrogen does not support growth. (Adapted from PMID: http://www.ncbi.nlm.nih.gov/genomeprj/31347). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilySulfurimonadaceae
GenusSulfurimonas
SpeciesSulfurimonas autotrophica
StrainDSM 16294

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Sulfurimonas autotrophica DSM 16294
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMarine - Sediment
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Sulfurimonas autotrophica DSM 16294, complete sequence.

Gene Summary

Adenine Count

703197 bp

Thymine Count

691305 bp

Guanine Count

380795 bp

Cytosine Count

377901 bp

Genome Length

2153198 bp

Protein-coding Genes

2159 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nifu family proteinSAUT_RS01470Not AvailablePositive272819 - 2730949911.96
hypothetical proteinSAUT_RS01475Not AvailablePositive273102 - 27369522627.8
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseSAUT_RS01480Not AvailablePositive273685 - 27498048308.8
(2fe-2s) ferredoxin domain-containing proteinSAUT_RS01485Not AvailablePositive275080 - 27545413720.8
aspartate 1-decarboxylaseSAUT_RS01490Not AvailablePositive275459 - 27582413780.5
ybab/ebfc family nucleoid-associated proteinSAUT_RS01495Not AvailablePositive275840 - 27613310374.5
pdz domain-containing proteinSAUT_RS01500Not AvailablePositive276134 - 27711437716.1
polyprenyl synthetase family proteinSAUT_RS01505Not AvailablePositive277134 - 27798531413.5
transketolaseSAUT_RS01510Not AvailablePositive277987 - 27990970068.4
ggdef domain-containing proteinSAUT_RS11000Not AvailableNegative279910 - 28101943048.6

Displaying genes 331 – 340 of 2232 in total

Metabolites

1630 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00016962-heptyl-3-hydroxy-4(1H)-quinoloneC16H21NO2Chemical structure of 2-heptyl-3-hydroxy-4(1H)-quinoloneNot available
Average259.349Da
Monoisotopic259.15722892Da
BASm0001774tetradecanoateC14H27O2Chemical structure of tetradecanoateNot available
Average227.363Da
Monoisotopic227.2011051Da
BASm0001808corynebactinC39H42N6O18Chemical structure of corynebactinNot available
Average882.789Da
Monoisotopic882.2555585Da
BASm00021577-cyano-7-deazaguanineC7H5N5OChemical structure of 7-cyano-7-deazaguanineNot available
Average175.1475Da
Monoisotopic175.0494098Da
BASm0002593(2E)-dodecenoyl-CoAC33H52N7O17P3SChemical structure of (2E)-dodecenoyl-CoA1066-12-2
Average943.789Da
Monoisotopic943.2353235Da
BASm0002626(6Z,9Z,12Z)-octadecatrienoyl-CoAC39H60N7O17P3SChemical structure of (6Z,9Z,12Z)-octadecatrienoyl-CoANot available
Average1023.92Da
Monoisotopic1023.300119988Da

Displaying 1–10 of 1630 metabolites

Health Effects

No health effects information available for this bacterium.