Shewanella chilikensis str. JC5

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella chilikensis str. JC5 is a Gram-negative, rod-shaped bacterium that does not form spores and exhibits optimal growth at 29.0°C. As a member of the Shewanella genus, this strain is likely to possess metabolic versatility, which is characteristic of many Shewanella species. These bacteria are known for their ability to reduce metals and may play important roles in biogeochemical cycles, particularly in aquatic environments. The non-spore-forming nature of Shewanella chilikensis str. JC5 suggests that it relies on vegetative growth for survival, which can be influenced by environmental conditions such as temperature and nutrient availability. The optimal growth temperature of 29.0°C indicates a preference for mesophilic conditions, which aligns with its potential habitat in freshwater or marine ecosystems where temperatures typically fluctuate within this range. In terms of ecological implications, Shewanella chilikensis str. JC5 may contribute to the degradation of organic materials and the cycling of nutrients in its environment. Its metabolic capabilities could enable it to interact with various substrates, including those containing metal ions, thereby influencing the surrounding microbial community dynamics and contributing to the overall health of the ecosystem. Further studies could elucidate the specific roles and interactions of this strain in its natural habitat, offering insights into its ecological significance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella chilikensis
StrainJC5

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Shewanella chilikensis str. JC5
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature29
Temperature rangemesophilic
Habitatsediment; water; Zipaquira salt mine
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shewanella chilikensis strain JC5 Ga0191653_190, whole genome

Gene Summary

Adenine Count

1057314 bp

Thymine Count

1057402 bp

Guanine Count

1160877 bp

Cytosine Count

1164920 bp

Genome Length

4441258 bp

Protein-coding Genes

3934 genes

Non-Coding Genes

143 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type iv pilus assembly protein pilaC8J23_1109Not AvailableNegative1512544 - 151301415942.2
nicotinate-nucleotide pyrophosphorylaseC8J23_11010Not AvailableNegative1514020 - 151488030797.4
n-acetylmuramyl-l-alanine amidase ampd (negative regulator of ampc)C8J23_11011Not AvailablePositive1515065 - 151561020211.7
ampe protein (signaling modulator of ampd)C8J23_11012Not AvailablePositive1515664 - 151651531948.2
gntr family transcriptional regulatorC8J23_11013Not AvailablePositive1516777 - 151752928254.0
pyruvate dehydrogenase e1 componentC8J23_11014Not AvailablePositive1517602 - 152026899316.2
pyruvate dehydrogenase e2 component (dihydrolipoamide acetyltransferase)C8J23_11015Not AvailablePositive1520282 - 152226468031.7
dihydrolipoamide dehydrogenaseC8J23_11016Not AvailablePositive1522422 - 152385250604.4
diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)C8J23_11017Not AvailablePositive1524024 - 1528466167686.0
nte family proteinC8J23_11018Not AvailablePositive1528555 - 153077181364.2

Displaying genes 1391 – 1400 of 4077 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.