Paenibacillus rigui str. JCM 16352

rodaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus rigui str. JCM 16352 is a rod-shaped, spore-forming bacterium that displays characteristics of both Gram-negative and Gram-positive organisms. This unique classification suggests a complex cell wall structure that may influence its physiological properties and environmental adaptability. Optimal growth of P. rigui str. JCM 16352 occurs at a temperature of 29.0 °C, indicating a preference for moderate warmth that may align with specific ecological niches, potentially including soil or decaying organic matter where temperatures fluctuate around this range. As an aerobic organism, P. rigui str. JCM 16352 requires oxygen for its metabolic processes, which may facilitate its role in various biogeochemical cycles, particularly in aerobic decomposition. The ability to form spores enhances its survival under unfavorable conditions, allowing it to persist in environments that may experience fluctuations in nutrient availability or moisture. Understanding the traits of Paenibacillus rigui str. JCM 16352 can provide insight into its potential applications in biotechnology, particularly in soil health and nutrient cycling, where its aerobic metabolism and spore-forming capabilities could be harnessed for agricultural practices or bioremediation efforts. Furthermore, its specific temperature preference may offer clues about its ecological roles in temperate ecosystems, where it likely contributes to organic matter breakdown and nutrient replenishment.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus rigui
StrainJCM 16352

Profile

Physiology
Gram staining propertiesGram-negative / gram-positive
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationspore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paenibacillus rigui strain JCM 16352 contig106, whole genome

Gene Summary

Adenine Count

1771229 bp

Thymine Count

1796015 bp

Guanine Count

1773185 bp

Cytosine Count

1832403 bp

Genome Length

7172832 bp

Protein-coding Genes

6122 genes

Non-Coding Genes

133 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dehydrogenaseCF651_11045Not AvailablePositive2515594 - 251689547000.9
rna polymerase sigma factor sigjCF651_11050Not AvailablePositive2516996 - 251788632707.4
aldo/keto reductaseCF651_11055Not AvailableNegative2518025 - 251904437136.3
arac family transcriptional regulatorCF651_11060Not AvailablePositive2519253 - 252010431656.1
transcriptional regulatorCF651_11065Not AvailableNegative2520263 - 252058912516.0
hypothetical proteinCF651_11070Not AvailablePositive2521445 - 252245539467.5
glycosyltransferaseCF651_11075Not AvailablePositive2522477 - 252389854044.7
response regulatorCF651_11080Not AvailablePositive2524061 - 252473825785.8
udp-n-acetyl-d-glucosamine dehydrogenaseCF651_11085Not AvailablePositive2524761 - 252611950459.9
glutamine--fructose-6-phosphate transaminase (isomerizing)CF651_11090Not AvailablePositive2526169 - 252800167256.7

Displaying genes 2211 – 2220 of 6255 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.