Paenibacillus rigui str. JCM 16352

rodaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus rigui str. JCM 16352 is a rod-shaped, spore-forming bacterium that displays characteristics of both Gram-negative and Gram-positive organisms. This unique classification suggests a complex cell wall structure that may influence its physiological properties and environmental adaptability. Optimal growth of P. rigui str. JCM 16352 occurs at a temperature of 29.0 °C, indicating a preference for moderate warmth that may align with specific ecological niches, potentially including soil or decaying organic matter where temperatures fluctuate around this range. As an aerobic organism, P. rigui str. JCM 16352 requires oxygen for its metabolic processes, which may facilitate its role in various biogeochemical cycles, particularly in aerobic decomposition. The ability to form spores enhances its survival under unfavorable conditions, allowing it to persist in environments that may experience fluctuations in nutrient availability or moisture. Understanding the traits of Paenibacillus rigui str. JCM 16352 can provide insight into its potential applications in biotechnology, particularly in soil health and nutrient cycling, where its aerobic metabolism and spore-forming capabilities could be harnessed for agricultural practices or bioremediation efforts. Furthermore, its specific temperature preference may offer clues about its ecological roles in temperate ecosystems, where it likely contributes to organic matter breakdown and nutrient replenishment.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus rigui
StrainJCM 16352

Profile

Physiology
Gram staining propertiesGram-negative / gram-positive
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationspore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paenibacillus rigui strain JCM 16352 contig106, whole genome

Gene Summary

Adenine Count

1771229 bp

Thymine Count

1796015 bp

Guanine Count

1773185 bp

Cytosine Count

1832403 bp

Genome Length

7172832 bp

Protein-coding Genes

6122 genes

Non-Coding Genes

133 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
endopeptidase laCF651_08525Not AvailableNegative1936740 - 193907387196.8
atp-dependent protease lonbCF651_08530Not AvailableNegative1939299 - 194100261236.0
n-acetylmuramoyl-l-alanine amidaseCF651_08535Not AvailablePositive1941216 - 194196527846.8
hypothetical proteinCF651_08540Not AvailableNegative1941910 - 194267128015.5
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthaseCF651_08545Not AvailableNegative1942844 - 194395940201.1
atp-dependent protease atp-binding subunit clpxCF651_08550Not AvailableNegative1944080 - 194534546592.3
atp-dependent clp endopeptidase, proteolytic subunit clppCF651_08555Not AvailableNegative1945357 - 194595021631.2
trigger factorCF651_08560Not AvailableNegative1946490 - 194777347648.3
hypothetical proteinCF651_08565Not AvailableNegative1947920 - 194884336151.9
spore gernimation protein gercCF651_08570Not AvailableNegative1948921 - 195013546018.9

Displaying genes 1741 – 1750 of 6255 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.