Porphyromonas endodontalis ATCC 35406

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Porphyromonadaceae

Genus

Porphyromonas

Description

Porphyromonas endodontalis ATCC 35406 is a Gram-negative, curved rod-shaped bacterium that thrives in a temperature range of 35-40°C, falling under the category of thermophilic microorganisms. This microbial species is a heterotroph, utilizing organic compounds as its energy source, and is capable of producing energy through anaerobic respiration. The microbe's metabolism is characterized as fermentative, meaning it relies on the breakdown of glucose and other carbohydrates to generate energy. The Gram stain reaction of Porphyromonas endodontalis ATCC 35406 is negative, indicating the presence of a thin peptidoglycan layer in its cell wall. The microbe's shape is curved or irregularly shaped, allowing it to navigate through tight spaces and adhere to surfaces. It is found in various body sites across all possible species, including the human mouth, particularly in the gingival sulcus and periodontal pockets. As an obligate anaerobe, Porphyromonas endodontalis ATCC 35406 is highly sensitive to oxygen and requires a reduced atmosphere to survive. This microbe's dependence on a low-oxygen environment is likely due to its ability to thrive in the anaerobic conditions found in the deep pockets of the human mouth. One of the most significant features of Porphyromonas endodontalis ATCC 35406 is its ability to produce a variety of virulence factors, including lipopolysaccharides, hemolysins, and proteases, which contribute to its pathogenicity. This microbe is a significant contributor to periodontal disease, particularly in individuals with compromised immune systems. Despite its significance in disease, research on Porphyromonas endodontalis ATCC 35406 has led to the development of novel therapeutic strategies for the prevention and treatment of periodontal disease.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPorphyromonadaceae
GenusPorphyromonas
SpeciesPorphyromonas endodontalis
StrainATCC 35406

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Porphyromonas endodontalis ATCC 35406
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Porphyromonas endodontalis ATCC 35406 contig00004, whole genome

Gene Summary

Adenine Count

536018 bp

Thymine Count

547386 bp

Guanine Count

494251 bp

Cytosine Count

486853 bp

Genome Length

2064508 bp

Protein-coding Genes

1965 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinPOREN0001_0756Not AvailableNegative710370 - 7105587536.24
phenylalanine--trna ligase, alpha subunitPOREN0001_0757Not AvailablePositive710575 - 71159738613.1
cytidine and deoxycytidylate deaminase zinc-binding regionPOREN0001_0758Not AvailablePositive711688 - 71212816271.4
peptidase, s41 familyPOREN0001_0759Not AvailablePositive712157 - 71375859372.3
5-formyltetrahydrofolate cyclo-ligasePOREN0001_0760Not AvailablePositive713784 - 71432920307.4
urocanate hydratasePOREN0001_0761Not AvailablePositive714393 - 71635772825.7
hypothetical proteinPOREN0001_0762Not AvailablePositive716468 - 7165934692.89
hypothetical proteinPOREN0001_0763Not AvailablePositive716809 - 71784339773.4
hypothetical proteinPOREN0001_0764Not AvailableNegative717967 - 7180985077.24
hypothetical proteinPOREN0001_0765Not AvailablePositive718167 - 71870319041.9

Displaying genes 721 – 730 of 2018 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

299 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm00022412-demethylmenaquinone-8C50H70O2Chemical structure of 2-demethylmenaquinone-8Not available
Average703.0896Da
Monoisotopic702.5375815Da
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da

Displaying 1–10 of 299 metabolites

Health Effects

No health effects information available for this bacterium.