Bifidobacterium longum subsp. longum ATCC 55813

Gram-positiveRodNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Bifidobacteriales

Family

Bifidobacteriaceae

Genus

Bifidobacterium

Description

*Bifidobacterium longum subsp. longum ATCC 55813* is a gram-positive, rod-shaped bacterium best categorized as a heterotroph. This species thrives optimally at a temperature range of 30–37°C and is classified as an obligate anaerobe, meaning it requires an oxygen-free environment to grow and reproduce. Bifidobacterium longum subsp. longum is commonly found in the gastrointestinal tracts of various mammals, including humans, where it participates significantly in maintaining gut health. It colonizes various body sites, particularly the colon, but can also be present in the oral cavity and the vaginal microbiota. As a member of the Bifidobacteriaceae family, *B. longum* plays a critical role in the microbiome by contributing to the fermentation of dietary fibers, producing beneficial short-chain fatty acids like acetate and lactate. These byproducts help regulate gut pH and serve as energy sources for colonic cells. The presence of *B. longum* is associated with numerous health benefits, including enhanced immune function, improved digestion, and protection against intestinal pathogens. Research indicates that *B. longum* may also exert anti-inflammatory effects, making it a focus of interest in studies related to conditions such as irritable bowel syndrome (IBS) and inflammatory bowel diseases (IBD). Moreover, this strain has been utilized in probiotic formulations aimed at restoring microbial balance in individuals whose gut microbiota has been disrupted by antibiotic usage or gastrointestinal infections. Its robust nature and ability to adapt to various environments reinforce its potential as a therapeutic agent in promoting gut health and overall wellness.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderBifidobacteriales
FamilyBifidobacteriaceae
GenusBifidobacterium
SpeciesBifidobacterium longum
Strainsubsp. longum ATCC 55813

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Bifidobacterium longum subsp. longum ATCC 55813
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementClusters - Pairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bifidobacterium longum subsp. longum ATCC 55813


Gene Summary

Adenine Count

473238 bp

Thymine Count

469912 bp

Guanine Count

716575 bp

Cytosine Count

713133 bp

Genome Length

2372858 bp

Protein-coding Genes

2109 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5s ribosomal rnaNot AvailableNot AvailablePositive15 - 130Not Available
23s ribosomal rnaNot AvailableNot AvailablePositive138 - 3201Not Available
abc transporter, substrate-binding protein, family 5HMPREF0175_0001Not AvailablePositive444 - 193653432.6
hypothetical proteinHMPREF0175_0002Not AvailableNegative2113 - 22645393.46
hypothetical proteinHMPREF0175_0003Not AvailablePositive2670 - 300813400.0
16s ribosomal rnaNot AvailableNot AvailablePositive3641 - 5154Not Available
hypothetical proteinHMPREF0175_0004Not AvailableNegative3064 - 500775225.5
hypothetical proteinHMPREF0175_0005Not AvailableNegative5004 - 631150992.1
hypothetical proteinHMPREF0175_0006Not AvailableNegative6354 - 66149592.28
hypothetical proteinHMPREF0175_0007Not AvailableNegative6780 - 722917383.3

Displaying genes 1 – 10 of 2171 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

291 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00011795-hydroxyisourateC5H4N4O4Chemical structure of 5-hydroxyisourateNot available
Average184.1097Da
Monoisotopic184.0232546Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da

Displaying 1–10 of 291 metabolites

Health Effects

No health effects information available for this bacterium.