Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Stappiaceae
Genus
Stappia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Stappiaceae |
| Genus | Stappia |
| Species | Stappia indica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
825960 bp
Thymine Count
819759 bp
Guanine Count
1662501 bp
Cytosine Count
1703840 bp
Genome Length
5015470 bp
Protein-coding Genes
4471 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pimeloyl-acp methyl ester carboxylesterase | SAMN05421512_11655 | Not Available | Negative | 4830226 - 4830921 | 25100.5 |
| 3-demethylubiquinone-9 3-methyltransferase | SAMN05421512_11656 | Not Available | Negative | 4830968 - 4831732 | 27412.9 |
| aspartate kinase | SAMN05421512_11657 | Not Available | Positive | 4831900 - 4833150 | 44543.3 |
| phosphotransferase system, enzyme i, ptsp | SAMN05421512_11658 | Not Available | Positive | 4833236 - 4835503 | 82999.4 |
| bacterial peptide chain release factor 1 (brf-1) | SAMN05421512_11659 | Not Available | Positive | 4835577 - 4836650 | 39512.9 |
| [protein release factor]-glutamine n5-methyltransferase | SAMN05421512_11660 | Not Available | Positive | 4836647 - 4837528 | 31027.0 |
| protein of unknown function | SAMN05421512_11661 | Not Available | Positive | 4837934 - 4838728 | 28887.8 |
| atp-dependent clp protease atp-binding subunit clpb | SAMN05421512_11662 | Not Available | Positive | 4838971 - 4841571 | 94832.2 |
| murein dd-endopeptidase mepm and murein hydrolase activator nlpd, contain lysm domain | SAMN05421512_11663 | Not Available | Negative | 4841674 - 4843680 | 73429.2 |
| hypothetical protein | SAMN05421512_11664 | Not Available | Negative | 4844087 - 4844854 | 28192.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
