Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Stappiaceae
Genus
Stappia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Stappiaceae |
| Genus | Stappia |
| Species | Stappia indica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
825960 bp
Thymine Count
819759 bp
Guanine Count
1662501 bp
Cytosine Count
1703840 bp
Genome Length
5015470 bp
Protein-coding Genes
4471 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ssu ribosomal protein s6p | SAMN05421512_113110 | Not Available | Positive | 4456438 - 4456908 | 18015.0 |
| ssu ribosomal protein s18p | SAMN05421512_113111 | Not Available | Positive | 4456921 - 4457169 | 9541.0 |
| lsu ribosomal protein l9p | SAMN05421512_113112 | Not Available | Positive | 4457260 - 4457850 | 21696.1 |
| methyltransferase domain-containing protein | SAMN05421512_113113 | Not Available | Positive | 4457990 - 4458721 | 27107.4 |
| tyrosyl-trna synthetase | SAMN05421512_113114 | Not Available | Positive | 4458967 - 4460277 | 48288.2 |
| asma-like c-terminal region | SAMN05421512_113115 | Not Available | Negative | 4460359 - 4463631 | 115404.0 |
| peroxiredoxin q/bcp | SAMN05421512_113116 | Not Available | Positive | 4463828 - 4464301 | 16777.9 |
| uncharacterized conserved protein, contains ferritin-like duf455 domain | SAMN05421512_113117 | Not Available | Positive | 4464365 - 4465291 | 34503.1 |
| murein dd-endopeptidase mepm and murein hydrolase activator nlpd, contain lysm domain | SAMN05421512_113118 | Not Available | Positive | 4465469 - 4466806 | 46414.3 |
| bacterial peptide chain release factor 2 (brf-2) | SAMN05421512_113119 | Not Available | Negative | 4466895 - 4467863 | 35636.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
