Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Stappiaceae
Genus
Stappia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Stappiaceae |
| Genus | Stappia |
| Species | Stappia indica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
825960 bp
Thymine Count
819759 bp
Guanine Count
1662501 bp
Cytosine Count
1703840 bp
Genome Length
5015470 bp
Protein-coding Genes
4471 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN05421512_101234 | Not Available | Negative | 256030 - 256731 | 24513.3 |
| fumarase, class ii | SAMN05421512_101235 | Not Available | Negative | 256901 - 258334 | 50705.2 |
| diguanylate cyclase (ggdef) domain-containing protein | SAMN05421512_101236 | Not Available | Positive | 258422 - 260782 | 85335.2 |
| predicted transcription regulator, contains hth domain, marr family | SAMN05421512_101237 | Not Available | Negative | 260798 - 261340 | 19105.4 |
| hypothetical protein | SAMN05421512_101238 | Not Available | Negative | 261425 - 262144 | 25151.4 |
| d-amino-acid dehydrogenase | SAMN05421512_101239 | Not Available | Positive | 262355 - 263617 | 44895.1 |
| trap-type c4-dicarboxylate transport system, substrate-binding protein | SAMN05421512_101240 | Not Available | Positive | 263717 - 264706 | 34673.9 |
| trap-type c4-dicarboxylate transport system, small permease component | SAMN05421512_101241 | Not Available | Positive | 264925 - 265458 | 19076.7 |
| trap transporter, dctm subunit | SAMN05421512_101242 | Not Available | Positive | 265465 - 266772 | 46715.2 |
| 5-oxoprolinase (atp-hydrolysing) | SAMN05421512_101243 | Not Available | Positive | 266943 - 270545 | 128913.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
