Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Stappiaceae
Genus
Stappia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Stappiaceae |
| Genus | Stappia |
| Species | Stappia indica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
825960 bp
Thymine Count
819759 bp
Guanine Count
1662501 bp
Cytosine Count
1703840 bp
Genome Length
5015470 bp
Protein-coding Genes
4471 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribonuclease d | SAMN05421512_110160 | Not Available | Positive | 3761646 - 3762281 | 23053.4 |
| lipopolysaccharide export system protein lptc | SAMN05421512_110161 | Not Available | Positive | 3762439 - 3763149 | 25288.0 |
| lipopolysaccharide export system protein lpta | SAMN05421512_110162 | Not Available | Positive | 3763146 - 3763727 | 20170.0 |
| lipopolysaccharide export system atp-binding protein | SAMN05421512_110163 | Not Available | Positive | 3763911 - 3764714 | 29588.8 |
| rna polymerase, sigma 54 subunit, rpon/sigl | SAMN05421512_110164 | Not Available | Positive | 3764936 - 3766525 | 57962.4 |
| ribosomal subunit interface protein | SAMN05421512_110165 | Not Available | Positive | 3766976 - 3767554 | 21135.8 |
| pts iia-like nitrogen-regulatory protein ptsn | SAMN05421512_110166 | Not Available | Positive | 3767645 - 3768109 | 16388.9 |
| hypothetical protein | SAMN05421512_110167 | Not Available | Negative | 3768204 - 3768461 | 9329.19 |
| molecular chaperone ibpa, hsp20 family | SAMN05421512_110168 | Not Available | Negative | 3768540 - 3768968 | 16225.5 |
| hypothetical protein | SAMN05421512_110169 | Not Available | Positive | 3769480 - 3770085 | 21865.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
