Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Stappiaceae
Genus
Stappia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Stappiaceae |
| Genus | Stappia |
| Species | Stappia indica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
825960 bp
Thymine Count
819759 bp
Guanine Count
1662501 bp
Cytosine Count
1703840 bp
Genome Length
5015470 bp
Protein-coding Genes
4471 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Tmrna,resume consensus sequence (at 213): aatagttgcaaatgacaa | Not Available | Not Available | Positive | 205427 - 205778 | Not Available |
| hypothetical protein | SAMN05421512_101196 | Not Available | Positive | 205821 - 206582 | 27607.4 |
| protein of unknown function | SAMN05421512_101197 | Not Available | Positive | 206627 - 206845 | 7994.25 |
| ribbon-helix-helix domain-containing protein | SAMN05421512_101198 | Not Available | Positive | 206852 - 207097 | 8754.42 |
| asma family protein | SAMN05421512_101199 | Not Available | Negative | 207130 - 210987 | 136742.0 |
| d-lactate dehydrogenase (cytochrome) | SAMN05421512_101200 | Not Available | Negative | 211058 - 212473 | 50379.2 |
| (3s)-malyl-coa thioesterase | SAMN05421512_101201 | Not Available | Positive | 212832 - 213326 | 18793.1 |
| chloride channel protein, cic family | SAMN05421512_101202 | Not Available | Positive | 213375 - 215018 | 57741.2 |
| xaa-pro aminopeptidase | SAMN05421512_101203 | Not Available | Negative | 215052 - 216866 | 64238.2 |
| hypothetical protein | SAMN05421512_101204 | Not Available | Positive | 217134 - 217358 | 8088.46 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
