Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Stappiaceae
Genus
Stappia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Stappiaceae |
| Genus | Stappia |
| Species | Stappia indica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
825960 bp
Thymine Count
819759 bp
Guanine Count
1662501 bp
Cytosine Count
1703840 bp
Genome Length
5015470 bp
Protein-coding Genes
4471 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative hydroxymethylpyrimidine transport system substrate-binding protein | SAMN05421512_109142 | Not Available | Positive | 3453714 - 3454649 | 34170.4 |
| thiaminase (transcriptional activator tena) | SAMN05421512_109143 | Not Available | Positive | 3454646 - 3455374 | 26373.3 |
| putative hydroxymethylpyrimidine transport system atp-binding protein | SAMN05421512_109144 | Not Available | Positive | 3455371 - 3456129 | 26703.3 |
| putative hydroxymethylpyrimidine transport system permease protein | SAMN05421512_109145 | Not Available | Positive | 3456126 - 3456908 | 27665.8 |
| thiamine pyrophosphokinase | SAMN05421512_109146 | Not Available | Negative | 3456905 - 3457561 | 22641.3 |
| predicted homoserine dehydrogenase, contains c-terminal saf domain | SAMN05421512_109147 | Not Available | Positive | 3457655 - 3458998 | 48220.1 |
| l-serine dehydratase | SAMN05421512_109148 | Not Available | Negative | 3459010 - 3460392 | 47991.6 |
| dna-binding transcriptional regulator, gntr family | SAMN05421512_109149 | Not Available | Negative | 3460588 - 3461295 | 26039.2 |
| kynureninase | SAMN05421512_109150 | Not Available | Positive | 3461424 - 3462686 | 45179.2 |
| tryptophan 2,3-dioxygenase | SAMN05421512_109151 | Not Available | Positive | 3462683 - 3463561 | 33819.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
