Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Stappiaceae
Genus
Stappia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Stappiaceae |
| Genus | Stappia |
| Species | Stappia indica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
825960 bp
Thymine Count
819759 bp
Guanine Count
1662501 bp
Cytosine Count
1703840 bp
Genome Length
5015470 bp
Protein-coding Genes
4471 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hydroxymethylglutaryl-coa lyase | SAMN05421512_108155 | Not Available | Negative | 3189413 - 3190312 | 31287.6 |
| 3-hydroxy-3-methylglutaryl-coenzyme a reductase | SAMN05421512_108156 | Not Available | Negative | 3190337 - 3191614 | 45092.5 |
| trap transporter, dctm subunit | SAMN05421512_108157 | Not Available | Negative | 3191640 - 3192953 | 46593.6 |
| trap-type mannitol/chloroaromatic compound transport system, small permease component | SAMN05421512_108158 | Not Available | Negative | 3192950 - 3193462 | 18749.3 |
| trap-type mannitol/chloroaromatic compound transport system, substrate-binding protein | SAMN05421512_108159 | Not Available | Negative | 3193559 - 3194590 | 36729.0 |
| transcriptional regulator, gntr family | SAMN05421512_108160 | Not Available | Positive | 3194729 - 3196129 | 51421.2 |
| shikimate dehydrogenase | SAMN05421512_108161 | Not Available | Negative | 3196113 - 3196976 | 30101.8 |
| transcriptional regulator, gntr family | SAMN05421512_108162 | Not Available | Negative | 3197091 - 3197777 | 25507.5 |
| trap-type c4-dicarboxylate transport system, substrate-binding protein | SAMN05421512_108163 | Not Available | Positive | 3198063 - 3199049 | 36349.4 |
| trap-type c4-dicarboxylate transport system, small permease component | SAMN05421512_108164 | Not Available | Positive | 3199137 - 3199664 | 19719.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
