Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Stappiaceae
Genus
Stappia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Stappiaceae |
| Genus | Stappia |
| Species | Stappia indica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
825960 bp
Thymine Count
819759 bp
Guanine Count
1662501 bp
Cytosine Count
1703840 bp
Genome Length
5015470 bp
Protein-coding Genes
4471 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ferredoxin, 2fe-2s | SAMN05421512_101115 | Not Available | Negative | 116039 - 116359 | 11231.3 |
| hypothetical protein | SAMN05421512_101116 | Not Available | Negative | 116466 - 116846 | 13270.8 |
| hypothetical protein | SAMN05421512_101117 | Not Available | Negative | 117109 - 117423 | 10484.5 |
| apolipoprotein a1/a4/e domain-containing protein | SAMN05421512_101118 | Not Available | Positive | 117681 - 123449 | 205340.0 |
| cholesterol transport system auxiliary component | SAMN05421512_101119 | Not Available | Negative | 124311 - 124946 | 22296.9 |
| phospholipid/cholesterol/gamma-hch transport system substrate-binding protein | SAMN05421512_101120 | Not Available | Negative | 124943 - 126592 | 57781.4 |
| phospholipid/cholesterol/gamma-hch transport system atp-binding protein | SAMN05421512_101121 | Not Available | Negative | 126611 - 127420 | 29350.7 |
| phospholipid/cholesterol/gamma-hch transport system permease protein | SAMN05421512_101122 | Not Available | Negative | 127421 - 128566 | 41292.5 |
| uncharacterized conserved protein, nad-dependent epimerase/dehydratase family | SAMN05421512_101123 | Not Available | Positive | 128800 - 129813 | 35929.1 |
| l-alanine-dl-glutamate epimerase | SAMN05421512_101124 | Not Available | Positive | 129810 - 130793 | 34547.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
