Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Stappiaceae
Genus
Stappia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Stappiaceae |
| Genus | Stappia |
| Species | Stappia indica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
825960 bp
Thymine Count
819759 bp
Guanine Count
1662501 bp
Cytosine Count
1703840 bp
Genome Length
5015470 bp
Protein-coding Genes
4471 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| selenocysteine lyase/cysteine desulfurase | SAMN05421512_10752 | Not Available | Positive | 2772402 - 2773592 | 43675.1 |
| peptide/nickel transport system substrate-binding protein | SAMN05421512_10753 | Not Available | Positive | 2773635 - 2775185 | 56278.9 |
| peptide/nickel transport system permease protein | SAMN05421512_10754 | Not Available | Positive | 2775290 - 2776243 | 33589.2 |
| peptide/nickel transport system permease protein | SAMN05421512_10755 | Not Available | Positive | 2776240 - 2777091 | 30157.8 |
| peptide/nickel transport system atp-binding protein | SAMN05421512_10756 | Not Available | Positive | 2777088 - 2778845 | 62618.6 |
| tyrosine phosphatase family protein | SAMN05421512_10757 | Not Available | Positive | 2778993 - 2779592 | 21727.2 |
| threonine/homoserine/homoserine lactone efflux protein | SAMN05421512_10758 | Not Available | Positive | 2779727 - 2780320 | 21037.6 |
| mannose-6-phosphate isomerase, cupin superfamily | SAMN05421512_10759 | Not Available | Positive | 2780334 - 2780768 | 15942.7 |
| uncharacterized conserved protein, cupin superfamily | SAMN05421512_10760 | Not Available | Positive | 2780765 - 2781277 | 17900.3 |
| transcriptional regulator, lysr family | SAMN05421512_10761 | Not Available | Negative | 2781256 - 2782152 | 31558.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
