Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Stappiaceae
Genus
Stappia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Stappiaceae |
| Genus | Stappia |
| Species | Stappia indica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
825960 bp
Thymine Count
819759 bp
Guanine Count
1662501 bp
Cytosine Count
1703840 bp
Genome Length
5015470 bp
Protein-coding Genes
4471 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, gntr family | SAMN05421512_106299 | Not Available | Negative | 2688040 - 2688765 | 26999.2 |
| tripartite atp-independent transporter, dctq component | SAMN05421512_106300 | Not Available | Positive | 2688906 - 2689493 | 21544.6 |
| trap transporter, dctm subunit | SAMN05421512_106301 | Not Available | Positive | 2689490 - 2690764 | 44343.5 |
| carnitine 3-dehydrogenase | SAMN05421512_106302 | Not Available | Positive | 2690761 - 2691690 | 32330.9 |
| trap-type c4-dicarboxylate transport system, substrate-binding protein | SAMN05421512_106303 | Not Available | Positive | 2691822 - 2692790 | 34975.0 |
| 2,3-dihydroxy-p-cumate/2,3-dihydroxybenzoate 3,4-dioxygenase | SAMN05421512_106304 | Not Available | Positive | 2692862 - 2693725 | 31016.4 |
| 2,3-dihydroxy-p-cumate/2,3-dihydroxybenzoate 3,4-dioxygenase | SAMN05421512_106305 | Not Available | Positive | 2693722 - 2694603 | 32660.1 |
| hcomoda/2-hydroxy-3-carboxy-muconic semialdehyde decarboxylase | SAMN05421512_106306 | Not Available | Positive | 2694603 - 2695295 | 24134.2 |
| 2-hydroxymuconate semialdehyde dehydrogenase | SAMN05421512_106307 | Not Available | Positive | 2695292 - 2696746 | 51693.4 |
| 2-oxo-hept-3-ene-1,7-dioate hydratase | SAMN05421512_106308 | Not Available | Positive | 2696762 - 2697544 | 27998.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
