Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Stappiaceae
Genus
Stappia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Stappiaceae |
| Genus | Stappia |
| Species | Stappia indica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
825960 bp
Thymine Count
819759 bp
Guanine Count
1662501 bp
Cytosine Count
1703840 bp
Genome Length
5015470 bp
Protein-coding Genes
4471 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nuclease homologue | SAMN05421512_106229 | Not Available | Negative | 2609326 - 2610339 | 34752.2 |
| phage repressor protein c, contains cro/c1-type hth and peptisase s24 domains | SAMN05421512_106230 | Not Available | Negative | 2610389 - 2611063 | 23857.5 |
| uncharacterized conserved protein, duf952 family | SAMN05421512_106231 | Not Available | Positive | 2611358 - 2611699 | 12288.6 |
| dihydroorotate oxidase a | SAMN05421512_106232 | Not Available | Positive | 2611699 - 2612811 | 38431.3 |
| betaine aldehyde dehydrogenase | SAMN05421512_106233 | Not Available | Negative | 2612819 - 2614282 | 51766.4 |
| choline dehydrogenase | SAMN05421512_106234 | Not Available | Negative | 2614346 - 2616001 | 60302.4 |
| transcriptional regulator, tetr family | SAMN05421512_106235 | Not Available | Negative | 2616006 - 2616626 | 22575.2 |
| glycine betaine/proline transport system substrate-binding protein | SAMN05421512_106236 | Not Available | Positive | 2617300 - 2618247 | 33539.8 |
| glycine betaine/proline transport system permease protein | SAMN05421512_106237 | Not Available | Positive | 2618366 - 2619214 | 30198.8 |
| glycine betaine/proline transport system atp-binding protein | SAMN05421512_106238 | Not Available | Positive | 2619211 - 2620242 | 37288.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
