Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Stappiaceae
Genus
Stappia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Stappiaceae |
| Genus | Stappia |
| Species | Stappia indica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
825960 bp
Thymine Count
819759 bp
Guanine Count
1662501 bp
Cytosine Count
1703840 bp
Genome Length
5015470 bp
Protein-coding Genes
4471 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l,d-transpeptidase catalytic domain | SAMN05421512_10667 | Not Available | Positive | 2430868 - 2431398 | 19334.0 |
| uncharacterized conserved protein, duf983 family | SAMN05421512_10668 | Not Available | Positive | 2431539 - 2431928 | 14128.6 |
| surfeit locus 1 family protein | SAMN05421512_10669 | Not Available | Positive | 2431918 - 2432700 | 28700.5 |
| peroxiredoxin | SAMN05421512_10670 | Not Available | Negative | 2433431 - 2433913 | 16595.0 |
| suppressor for copper-sensitivity b | SAMN05421512_10671 | Not Available | Negative | 2434030 - 2435040 | 34957.5 |
| putative transcriptional regulator | SAMN05421512_10672 | Not Available | Positive | 2435199 - 2435798 | 21168.4 |
| threonine synthase | SAMN05421512_10673 | Not Available | Positive | 2436091 - 2437560 | 52836.5 |
| predicted zn-dependent peptidase | SAMN05421512_10674 | Not Available | Positive | 2437560 - 2438858 | 46411.2 |
| [ssu ribosomal protein s5p]-alanine acetyltransferase | SAMN05421512_10675 | Not Available | Positive | 2438878 - 2439582 | 25776.8 |
| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s) | SAMN05421512_10676 | Not Available | Positive | 2439593 - 2442520 | 106945.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
