Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Stappiaceae
Genus
Stappia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Stappiaceae |
| Genus | Stappia |
| Species | Stappia indica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
825960 bp
Thymine Count
819759 bp
Guanine Count
1662501 bp
Cytosine Count
1703840 bp
Genome Length
5015470 bp
Protein-coding Genes
4471 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bacterioferritin | SAMN05421512_105375 | Not Available | Positive | 2356442 - 2356927 | 18414.8 |
| lipase (class 3) | SAMN05421512_105376 | Not Available | Positive | 2357084 - 2358244 | 40512.4 |
| 2-oxo-hept-3-ene-1,7-dioate hydratase | SAMN05421512_105377 | Not Available | Positive | 2358337 - 2359218 | 29525.7 |
| hypothetical protein | SAMN05421512_105378 | Not Available | Positive | 2359624 - 2359794 | 5815.85 |
| hypothetical protein | SAMN05421512_1061 | Not Available | Negative | 2359795 - 2359956 | 5558.55 |
| c4-dicarboxylate-binding protein dctp | SAMN05421512_1062 | Not Available | Positive | 2360434 - 2361432 | 36028.9 |
| trap-type c4-dicarboxylate transport system, small permease component | SAMN05421512_1063 | Not Available | Positive | 2361518 - 2362024 | 18465.8 |
| c4-dicarboxylate transporter, dctm subunit | SAMN05421512_1064 | Not Available | Positive | 2362025 - 2363299 | 44693.9 |
| 2-methylisocitrate lyase, pep mutase family | SAMN05421512_1065 | Not Available | Positive | 2363360 - 2364229 | 30774.8 |
| amidase | SAMN05421512_1066 | Not Available | Negative | 2364642 - 2366075 | 50697.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
