Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Stappiaceae
Genus
Stappia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Stappiaceae |
| Genus | Stappia |
| Species | Stappia indica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
825960 bp
Thymine Count
819759 bp
Guanine Count
1662501 bp
Cytosine Count
1703840 bp
Genome Length
5015470 bp
Protein-coding Genes
4471 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-met | Not Available | Not Available | Positive | 2277414 - 2277490 | Not Available |
| putative atp-binding cassette transporter | SAMN05421512_105306 | Not Available | Positive | 2277822 - 2279564 | 62485.2 |
| 4-methylaminobutanoate oxidase (formaldehyde-forming) | SAMN05421512_105307 | Not Available | Negative | 2279568 - 2282012 | 89165.9 |
| thiamine kinase | SAMN05421512_105308 | Not Available | Negative | 2282017 - 2282919 | 32539.9 |
| glycine betaine/proline transport system permease protein | SAMN05421512_105309 | Not Available | Negative | 2282916 - 2284982 | 73621.5 |
| glycine betaine/proline transport system atp-binding protein | SAMN05421512_105310 | Not Available | Negative | 2284985 - 2286040 | 37925.1 |
| glycine betaine/proline transport system substrate-binding protein | SAMN05421512_105311 | Not Available | Negative | 2286177 - 2287136 | 35213.4 |
| transcriptional regulator, deor family | SAMN05421512_105312 | Not Available | Positive | 2287354 - 2288115 | 27215.7 |
| udp-n-acetylglucosamine 1-carboxyvinyltransferase | SAMN05421512_105313 | Not Available | Positive | 2288230 - 2289516 | 46630.2 |
| l-alanine-dl-glutamate epimerase | SAMN05421512_105314 | Not Available | Positive | 2289626 - 2290855 | 45009.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
