Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Stappiaceae
Genus
Stappia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Stappiaceae |
| Genus | Stappia |
| Species | Stappia indica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
825960 bp
Thymine Count
819759 bp
Guanine Count
1662501 bp
Cytosine Count
1703840 bp
Genome Length
5015470 bp
Protein-coding Genes
4471 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trap transporter, dctm subunit | SAMN05421512_105275 | Not Available | Negative | 2241128 - 2242414 | 44953.2 |
| trap-type c4-dicarboxylate transport system, small permease component | SAMN05421512_105276 | Not Available | Negative | 2242416 - 2242967 | 20230.4 |
| transcriptional regulator, laci family | SAMN05421512_105277 | Not Available | Positive | 2243127 - 2244134 | 36006.4 |
| l-rhamnonate dehydratase | SAMN05421512_105278 | Not Available | Positive | 2244172 - 2245347 | 43027.6 |
| 2,4-diketo-3-deoxy-l-fuconate hydrolase | SAMN05421512_105279 | Not Available | Positive | 2245616 - 2246455 | 29861.8 |
| pas domain s-box-containing protein/diguanylate cyclase (ggdef) domain-containing protein | SAMN05421512_105280 | Not Available | Negative | 2246811 - 2249393 | 95534.7 |
| diguanylate cyclase (ggdef) domain-containing protein | SAMN05421512_105281 | Not Available | Negative | 2249467 - 2250219 | 27320.8 |
| uncharacterized membrane protein | SAMN05421512_105282 | Not Available | Negative | 2251355 - 2252173 | 29846.3 |
| hypothetical protein | SAMN05421512_105283 | Not Available | Negative | 2252185 - 2252376 | 6783.3 |
| cytochrome c oxidase cbb3-type subunit 3 | SAMN05421512_105284 | Not Available | Negative | 2252373 - 2253254 | 32760.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
