Stappia indica

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Stappiaceae

Genus

Stappia

Description

Stappia indica is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 32.0°C. This microbe is characterized by its distinct morphological and physiological traits, which align with the broader characteristics typically attributed to the genus Stappia. As a Gram-negative organism, Stappia indica possesses a thin peptidoglycan layer surrounded by an outer membrane, which contributes to its structural integrity and influences its interactions with the environment. Given its optimal growth temperature, Stappia indica may be well-suited to mesophilic environments, potentially indicating a niche within temperate ecosystems where the ambient temperature fluctuates around this range. While specific ecological roles and interactions are not detailed, the thermal preference suggests that Stappia indica could play a role in nutrient cycling or organic matter degradation in habitats that experience moderate temperatures. Furthermore, the rod shape of Stappia indica may confer advantages in motility and surface adherence, which are essential traits for colonization and interaction with various substrates. This morphology may also facilitate the microbe's ability to thrive in diverse environments, potentially contributing to a dynamic ecological role within its habitat. Understanding the physiological and environmental preferences of Stappia indica can provide insights into its potential functional contributions to microbial communities and ecosystem processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyStappiaceae
GenusStappia
SpeciesStappia indica
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature32
Temperature rangemesophilic
HabitatMarine
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Stappia indica strain USBA 352 genome assembly, contig:

Gene Summary

Adenine Count

825960 bp

Thymine Count

819759 bp

Guanine Count

1662501 bp

Cytosine Count

1703840 bp

Genome Length

5015470 bp

Protein-coding Genes

4471 genes

Non-Coding Genes

155 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trap transporter, dctm subunitSAMN05421512_105275Not AvailableNegative2241128 - 224241444953.2
trap-type c4-dicarboxylate transport system, small permease componentSAMN05421512_105276Not AvailableNegative2242416 - 224296720230.4
transcriptional regulator, laci familySAMN05421512_105277Not AvailablePositive2243127 - 224413436006.4
l-rhamnonate dehydrataseSAMN05421512_105278Not AvailablePositive2244172 - 224534743027.6
2,4-diketo-3-deoxy-l-fuconate hydrolaseSAMN05421512_105279Not AvailablePositive2245616 - 224645529861.8
pas domain s-box-containing protein/diguanylate cyclase (ggdef) domain-containing proteinSAMN05421512_105280Not AvailableNegative2246811 - 224939395534.7
diguanylate cyclase (ggdef) domain-containing proteinSAMN05421512_105281Not AvailableNegative2249467 - 225021927320.8
uncharacterized membrane proteinSAMN05421512_105282Not AvailableNegative2251355 - 225217329846.3
hypothetical proteinSAMN05421512_105283Not AvailableNegative2252185 - 22523766783.3
cytochrome c oxidase cbb3-type subunit 3SAMN05421512_105284Not AvailableNegative2252373 - 225325432760.5

Displaying genes 2181 – 2190 of 4626 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Bacterial peritonitisCausesPMC8271035

Displaying health effects 1 – 1 of 1 in total