Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Stappiaceae
Genus
Stappia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Stappiaceae |
| Genus | Stappia |
| Species | Stappia indica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
825960 bp
Thymine Count
819759 bp
Guanine Count
1662501 bp
Cytosine Count
1703840 bp
Genome Length
5015470 bp
Protein-coding Genes
4471 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trap transporter, dctm subunit | SAMN05421512_105225 | Not Available | Positive | 2186295 - 2187623 | 46806.8 |
| choline dehydrogenase | SAMN05421512_105226 | Not Available | Positive | 2187665 - 2189272 | 58366.0 |
| 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) | SAMN05421512_105227 | Not Available | Positive | 2189323 - 2190171 | 30107.1 |
| trap transporter, dctm subunit | SAMN05421512_105228 | Not Available | Negative | 2190221 - 2191525 | 45244.2 |
| trap-type c4-dicarboxylate transport system, small permease component | SAMN05421512_105229 | Not Available | Negative | 2191522 - 2192004 | 17486.1 |
| trap-type c4-dicarboxylate transport system, substrate-binding protein | SAMN05421512_105230 | Not Available | Negative | 2192078 - 2193154 | 38809.5 |
| alpha/beta hydrolase family protein | SAMN05421512_105231 | Not Available | Negative | 2193180 - 2193971 | 27775.1 |
| hypothetical protein | SAMN05421512_105232 | Not Available | Negative | 2193971 - 2194522 | 20305.0 |
| transcriptional regulator, lysr family | SAMN05421512_105233 | Not Available | Positive | 2194688 - 2195620 | 34911.5 |
| hypothetical protein | SAMN05421512_105234 | Not Available | Negative | 2195628 - 2196083 | 16188.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
