Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Stappiaceae
Genus
Stappia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Stappiaceae |
| Genus | Stappia |
| Species | Stappia indica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
825960 bp
Thymine Count
819759 bp
Guanine Count
1662501 bp
Cytosine Count
1703840 bp
Genome Length
5015470 bp
Protein-coding Genes
4471 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dihydroorotate oxidase b, catalytic subunit | SAMN05421512_105215 | Not Available | Negative | 2176524 - 2177468 | 33227.2 |
| dihydroorotate dehydrogenase electron transfer subunit | SAMN05421512_105216 | Not Available | Negative | 2177462 - 2178313 | 31149.9 |
| c4-dicarboxylate transporter, dctm subunit | SAMN05421512_105217 | Not Available | Negative | 2178310 - 2179596 | 45049.1 |
| trap-type c4-dicarboxylate transport system, small permease component | SAMN05421512_105218 | Not Available | Negative | 2179593 - 2180096 | 18540.1 |
| c4-dicarboxylate-binding protein dctp | SAMN05421512_105219 | Not Available | Negative | 2180362 - 2181384 | 36996.1 |
| transcriptional regulator, contains xre-family hth domain | SAMN05421512_105220 | Not Available | Positive | 2181613 - 2182533 | 33733.9 |
| transcriptional regulator, gntr family | SAMN05421512_105221 | Not Available | Negative | 2182565 - 2183287 | 26991.4 |
| d-3-phosphoglycerate dehydrogenase | SAMN05421512_105222 | Not Available | Positive | 2183466 - 2184503 | 37220.1 |
| trap-type mannitol/chloroaromatic compound transport system, substrate-binding protein | SAMN05421512_105223 | Not Available | Positive | 2184588 - 2185604 | 36622.4 |
| trap-type c4-dicarboxylate transport system, small permease component | SAMN05421512_105224 | Not Available | Positive | 2185703 - 2186302 | 22079.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
