Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Stappiaceae
Genus
Stappia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Stappiaceae |
| Genus | Stappia |
| Species | Stappia indica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
825960 bp
Thymine Count
819759 bp
Guanine Count
1662501 bp
Cytosine Count
1703840 bp
Genome Length
5015470 bp
Protein-coding Genes
4471 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iron(iii) transport system permease protein | SAMN05421512_10575 | Not Available | Positive | 2038872 - 2041043 | 75869.7 |
| iron(iii) transport system atp-binding protein | SAMN05421512_10576 | Not Available | Positive | 2041043 - 2042104 | 37079.7 |
| hypothetical protein | SAMN05421512_10577 | Not Available | Positive | 2042353 - 2043534 | 43048.3 |
| 2-methylcitrate dehydratase prpd | SAMN05421512_10578 | Not Available | Positive | 2043531 - 2044850 | 45998.9 |
| 3-methylfumaryl-coa hydratase | SAMN05421512_10579 | Not Available | Positive | 2044847 - 2045671 | 30447.2 |
| lysr family transcriptional regulator, nitrogen assimilation regulatory protein | SAMN05421512_10580 | Not Available | Negative | 2045732 - 2046670 | 34587.1 |
| alcohol dehydrogenase | SAMN05421512_10581 | Not Available | Negative | 2046692 - 2047816 | 38992.4 |
| kynurenine formamidase | SAMN05421512_10582 | Not Available | Positive | 2048087 - 2049052 | 34347.9 |
| amino acid/amide abc transporter substrate-binding protein, haat family | SAMN05421512_10583 | Not Available | Positive | 2049115 - 2050401 | 46179.0 |
| amino acid/amide abc transporter membrane protein 1, haat family | SAMN05421512_10584 | Not Available | Positive | 2050567 - 2051472 | 32043.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
