Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Stappiaceae
Genus
Stappia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Stappiaceae |
| Genus | Stappia |
| Species | Stappia indica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
825960 bp
Thymine Count
819759 bp
Guanine Count
1662501 bp
Cytosine Count
1703840 bp
Genome Length
5015470 bp
Protein-coding Genes
4471 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide/nickel transport system permease protein | SAMN05421512_10545 | Not Available | Positive | 2009113 - 2009964 | 30512.2 |
| peptide/nickel transport system atp-binding protein/oligopeptide transport system atp-binding protein | SAMN05421512_10546 | Not Available | Positive | 2009966 - 2010967 | 36261.1 |
| peptide/nickel transport system atp-binding protein/oligopeptide transport system atp-binding protein | SAMN05421512_10547 | Not Available | Positive | 2010964 - 2011965 | 35995.8 |
| microcystin degradation protein mlrc, contains duf1485 domain | SAMN05421512_10548 | Not Available | Positive | 2011965 - 2013434 | 52763.1 |
| d-serine deaminase, pyridoxal phosphate-dependent | SAMN05421512_10549 | Not Available | Positive | 2013452 - 2014531 | 37294.7 |
| transcriptional regulator, gntr family | SAMN05421512_10550 | Not Available | Negative | 2014557 - 2015258 | 26116.3 |
| glucuronate isomerase | SAMN05421512_10551 | Not Available | Positive | 2015528 - 2016934 | 52466.0 |
| tripartite atp-independent transporter solute receptor, dctp family | SAMN05421512_10552 | Not Available | Positive | 2016968 - 2017948 | 36417.3 |
| trap-type c4-dicarboxylate transport system, small permease component | SAMN05421512_10553 | Not Available | Positive | 2018017 - 2018538 | 18732.2 |
| trap transporter, dctm subunit | SAMN05421512_10554 | Not Available | Positive | 2018542 - 2019822 | 45263.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
