Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Stappiaceae
Genus
Stappia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Stappiaceae |
| Genus | Stappia |
| Species | Stappia indica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
825960 bp
Thymine Count
819759 bp
Guanine Count
1662501 bp
Cytosine Count
1703840 bp
Genome Length
5015470 bp
Protein-coding Genes
4471 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| o-antigen ligase | SAMN05421512_104275 | Not Available | Positive | 1845169 - 1846440 | 45684.7 |
| Trna-pro | Not Available | Not Available | Positive | 1846513 - 1846589 | Not Available |
| protein of unknown function | SAMN05421512_104277 | Not Available | Positive | 1846886 - 1847521 | 22974.0 |
| predicted dna-binding protein, contains ribbon-helix-helix (rhh) domain | SAMN05421512_104278 | Not Available | Positive | 1847631 - 1847921 | 10970.1 |
| lactoylglutathione lyase | SAMN05421512_104279 | Not Available | Positive | 1848090 - 1848485 | 15158.9 |
| tat (twin-arginine translocation) pathway signal sequence | SAMN05421512_104280 | Not Available | Positive | 1848516 - 1849040 | 19046.6 |
| choline dehydrogenase | SAMN05421512_104281 | Not Available | Positive | 1849055 - 1850626 | 57247.2 |
| glucose/arabinose dehydrogenase, beta-propeller fold | SAMN05421512_104282 | Not Available | Positive | 1850852 - 1852105 | 45566.6 |
| cytochrome c553 | SAMN05421512_104283 | Not Available | Positive | 1852123 - 1852740 | 21375.8 |
| hypothetical protein | SAMN05421512_104284 | Not Available | Negative | 1852762 - 1853175 | 14944.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
