Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Stappiaceae
Genus
Stappia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Stappiaceae |
| Genus | Stappia |
| Species | Stappia indica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
825960 bp
Thymine Count
819759 bp
Guanine Count
1662501 bp
Cytosine Count
1703840 bp
Genome Length
5015470 bp
Protein-coding Genes
4471 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| invasion protein ialb, involved in pathogenesis | SAMN05421512_104225 | Not Available | Negative | 1790448 - 1791086 | 22777.3 |
| peptide/nickel transport system substrate-binding protein | SAMN05421512_104226 | Not Available | Positive | 1791426 - 1793288 | 69119.8 |
| acyl-coa synthetase (amp-forming)/amp-acid ligase ii | SAMN05421512_104227 | Not Available | Positive | 1793308 - 1794930 | 57254.2 |
| two-component response regulator, pled family, consists of two rec domains and a diguanylate cyclase (ggdef) domain | SAMN05421512_104228 | Not Available | Positive | 1794927 - 1796081 | 40532.2 |
| predicted dithiol-disulfide isomerase, dsba family | SAMN05421512_104229 | Not Available | Positive | 1796129 - 1796824 | 25275.2 |
| enolase | SAMN05421512_104230 | Not Available | Negative | 1797046 - 1798320 | 44762.1 |
| 2-dehydro-3-deoxyphosphooctonate aldolase (kdo 8-p synthase) | SAMN05421512_104231 | Not Available | Negative | 1798419 - 1799270 | 29633.7 |
| udp-glucose pyrophosphorylase | SAMN05421512_104232 | Not Available | Positive | 1799560 - 1800441 | 32054.7 |
| udp-glucuronate 4-epimerase | SAMN05421512_104233 | Not Available | Positive | 1800453 - 1801463 | 37258.4 |
| pyridoxamine 5'-phosphate oxidase | SAMN05421512_104234 | Not Available | Positive | 1801475 - 1802086 | 22788.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
