Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Stappiaceae
Genus
Stappia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Stappiaceae |
| Genus | Stappia |
| Species | Stappia indica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
825960 bp
Thymine Count
819759 bp
Guanine Count
1662501 bp
Cytosine Count
1703840 bp
Genome Length
5015470 bp
Protein-coding Genes
4471 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-alanyl-d-alanine carboxypeptidase (penicillin-binding protein 5/6) | SAMN05421512_104195 | Not Available | Positive | 1758080 - 1759288 | 42799.9 |
| thymidylate kinase | SAMN05421512_104196 | Not Available | Positive | 1759281 - 1759952 | 24190.7 |
| dna polymerase iii, delta prime subunit | SAMN05421512_104197 | Not Available | Positive | 1759949 - 1761022 | 38995.6 |
| methionyl-trna synthetase | SAMN05421512_104198 | Not Available | Positive | 1761098 - 1762663 | 58162.4 |
| tatd dnase family protein | SAMN05421512_104199 | Not Available | Positive | 1762663 - 1763463 | 29415.8 |
| phosphoribosyl 1,2-cyclic phosphate phosphodiesterase | SAMN05421512_104200 | Not Available | Positive | 1763469 - 1764293 | 30000.9 |
| regulatory protein | SAMN05421512_104201 | Not Available | Positive | 1764290 - 1764826 | 19971.9 |
| hypothetical protein | SAMN05421512_104202 | Not Available | Negative | 1764867 - 1765775 | 32662.1 |
| pas domain s-box-containing protein/diguanylate cyclase (ggdef) domain-containing protein | SAMN05421512_104203 | Not Available | Negative | 1765858 - 1767816 | 70298.5 |
| acetyltransferase (gnat) family protein | SAMN05421512_104204 | Not Available | Negative | 1768221 - 1768763 | 19467.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
