Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Stappiaceae
Genus
Stappia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Stappiaceae |
| Genus | Stappia |
| Species | Stappia indica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
825960 bp
Thymine Count
819759 bp
Guanine Count
1662501 bp
Cytosine Count
1703840 bp
Genome Length
5015470 bp
Protein-coding Genes
4471 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-xylose isomerase | SAMN05421512_104145 | Not Available | Positive | 1707652 - 1708959 | 48838.9 |
| hypothetical protein | SAMN05421512_104146 | Not Available | Negative | 1709072 - 1709275 | 6994.27 |
| transcriptional regulator, lysr family | SAMN05421512_104147 | Not Available | Positive | 1709449 - 1710345 | 32147.7 |
| dimethylglycine dehydrogenase | SAMN05421512_104148 | Not Available | Negative | 1710361 - 1712796 | 89762.5 |
| trimethylamine---corrinoid protein co-methyltransferase | SAMN05421512_104149 | Not Available | Negative | 1712859 - 1714448 | 57100.7 |
| peptide/nickel transport system substrate-binding protein | SAMN05421512_104150 | Not Available | Positive | 1714984 - 1716675 | 61929.1 |
| peptide/nickel transport system permease protein | SAMN05421512_104151 | Not Available | Positive | 1716803 - 1717753 | 35014.9 |
| peptide/nickel transport system permease protein | SAMN05421512_104152 | Not Available | Positive | 1717772 - 1718791 | 37463.2 |
| peptide/nickel transport system atp-binding protein | SAMN05421512_104153 | Not Available | Positive | 1718805 - 1720892 | 76414.4 |
| adenylate cyclase | SAMN05421512_104154 | Not Available | Positive | 1721155 - 1722432 | 45024.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
