Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Stappiaceae
Genus
Stappia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Stappiaceae |
| Genus | Stappia |
| Species | Stappia indica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
825960 bp
Thymine Count
819759 bp
Guanine Count
1662501 bp
Cytosine Count
1703840 bp
Genome Length
5015470 bp
Protein-coding Genes
4471 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | SAMN05421512_103360 | Not Available | Negative | 1450282 - 1451013 | 25147.2 |
| glutamine amidotransferase | SAMN05421512_103361 | Not Available | Negative | 1451045 - 1451695 | 23140.9 |
| protein of unknown function | SAMN05421512_103362 | Not Available | Negative | 1451760 - 1452284 | 19410.9 |
| imidazoleglycerol-phosphate dehydratase | SAMN05421512_103363 | Not Available | Negative | 1452306 - 1452899 | 21617.8 |
| orotidine-5'-phosphate decarboxylase | SAMN05421512_103364 | Not Available | Positive | 1453066 - 1453815 | 25792.2 |
| alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase | SAMN05421512_103365 | Not Available | Negative | 1453826 - 1455016 | 41824.5 |
| glycine/d-amino acid oxidase | SAMN05421512_103366 | Not Available | Negative | 1455135 - 1456370 | 44591.1 |
| glutaryl-coa dehydrogenase | SAMN05421512_103367 | Not Available | Negative | 1456395 - 1457615 | 44760.5 |
| dna-binding transcriptional regulator, lysr family | SAMN05421512_103368 | Not Available | Positive | 1457804 - 1458727 | 34156.2 |
| rare lipoprotein a | SAMN05421512_103369 | Not Available | Negative | 1458995 - 1459366 | 13167.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
