Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Stappiaceae
Genus
Stappia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Stappiaceae |
| Genus | Stappia |
| Species | Stappia indica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
825960 bp
Thymine Count
819759 bp
Guanine Count
1662501 bp
Cytosine Count
1703840 bp
Genome Length
5015470 bp
Protein-coding Genes
4471 genes
Non-Coding Genes
155 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-carboxy-cis,cis-muconate cycloisomerase | SAMN05421512_103340 | Not Available | Negative | 1430397 - 1431752 | 46535.4 |
| protocatechuate 3,4-dioxygenase, alpha subunit | SAMN05421512_103341 | Not Available | Negative | 1431789 - 1432355 | 20793.6 |
| protocatechuate 3,4-dioxygenase, beta subunit | SAMN05421512_103342 | Not Available | Negative | 1432355 - 1433074 | 26843.9 |
| 4-carboxymuconolactone decarboxylase | SAMN05421512_103343 | Not Available | Negative | 1433071 - 1433481 | 14511.2 |
| 3-oxoadipate enol-lactonase | SAMN05421512_103344 | Not Available | Negative | 1433478 - 1434269 | 28023.6 |
| lysr family transcriptional regulator, pca operon transcriptional activator | SAMN05421512_103345 | Not Available | Positive | 1434368 - 1435294 | 32829.0 |
| transcriptional regulator, rpir family | SAMN05421512_103346 | Not Available | Negative | 1435306 - 1436199 | 31798.3 |
| predicted n-formylglutamate amidohydrolase | SAMN05421512_103347 | Not Available | Positive | 1436381 - 1437193 | 28815.1 |
| trap-type mannitol/chloroaromatic compound transport system, small permease component | SAMN05421512_103348 | Not Available | Positive | 1437190 - 1437789 | 22171.7 |
| trap transporter, dctm subunit | SAMN05421512_103349 | Not Available | Positive | 1437789 - 1439111 | 47832.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
