Candidatus Liberibacter asiaticus str. psy62

Gram-negative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Liberibacter

Description

Candidatus Liberibacter asiaticus str. psy62. Candidatus Liberibacter asiaticus causes Huanglongbing (also called citrus greening disease) in citrus in Asia. This organism causes a lethal infection to the tree and is transmitted from tree to tree by the sap-sucking Asian citrus psyllid, Diaphorina citri. Once infected the citrus tree turns yellow (huanglongbing means yellow dragon disease) and the fruit remains green. The genome of Candidatus Liberibacter asiaticus str. psy62 will provide information on the virulence factors involved in infection and transmission of this important plant pathogen. (NCBI BioProject: bp_list[1])

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusLiberibacter
SpeciesCandidatus Liberibacter asiaticus
Strainpsy62

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityYes

Genome Summary

Candidatus Liberibacter asiaticus str. psy62, complete sequence.

Gene Summary

Adenine Count

386793 bp

Thymine Count

392946 bp

Guanine Count

224809 bp

Cytosine Count

222780 bp

Genome Length

1227328 bp

Protein-coding Genes

1001 genes

Non-Coding Genes

113 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp-dependent chaperone clpbCLIBASIA_RS03825Not AvailablePositive848964 - 85152595770.3
m23 family metallopeptidaseCLIBASIA_RS03830Not AvailableNegative851980 - 85393873746.5
16s ribosomal rnaNot AvailableNot AvailablePositive854291 - 855792Not Available
Trna-ileNot AvailableNot AvailablePositive855982 - 856058Not Available
Trna-alaNot AvailableNot AvailablePositive856071 - 856146Not Available
23s ribosomal rnaNot AvailableNot AvailablePositive856392 - 859184Not Available
5s ribosomal rnaNot AvailableNot AvailablePositive859242 - 859356Not Available
Trna-metNot AvailableNot AvailablePositive859402 - 859478Not Available
iron-sulfur cluster assembly proteinCLIBASIA_RS03865Not AvailablePositive859502 - 85980711392.0
tyrosine recombinase xercCLIBASIA_RS03870Not AvailableNegative859804 - 86079037986.3

Displaying genes 831 – 840 of 1114 in total

Metabolites

796 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da

Displaying 1–10 of 796 metabolites

Health Effects

No health effects information available for this bacterium.