Desulfomicrobium baculatum DSM 4028

Gram-negativeRodMotileAnaerobic

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfomicrobiaceae

Genus

Desulfomicrobium

Description

Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) is a strictly anaerobic, mesophilic, sulfate reducer Gram-negative bacterium, originally isolated from water-saturated manganese carbonate ore. Its metabolism is respiratory or fermentative. It reduces sulfate to sulphide, and in the presence of sulfate, pyruvate and lactate are incompletely oxidized to acetate and CO2. Furthermore, sulfate, sulfite and thiosulfate are used as electron acceptors and are reduced to H2S. It is not able to reduce nitrate. Malate, fumarate and pyruvate can be fermented with succinate and acetate as end products, but the carbohydrates are not fermented. D. baculatum does not require NaCl for growth, although NaCl concentrations up to 6% (w/v) are tolerated, and has an optimal growth temperature between 28-37 degrees Celsius. Vitamins are not required for growth . This is the first completed genome sequence of a member of the deltaproteobacterial family Desulfomicrobiaceae (Adapted from PMID 21304634). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfomicrobiaceae
GenusDesulfomicrobium
SpeciesDesulfomicrobium baculatum
StrainDSM 4028

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Desulfomicrobium baculatum DSM 4028
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Desulfomicrobium baculatum DSM 4028, complete sequence.

Gene Summary

Adenine Count

813472 bp

Thymine Count

816935 bp

Guanine Count

1155369 bp

Cytosine Count

1156881 bp

Genome Length

3942657 bp

Protein-coding Genes

3453 genes

Non-Coding Genes

88 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Trna-argNot AvailableNot AvailablePositive831554 - 831631Not Available
tetratricopeptide repeat proteinDBAC_RS03855Not AvailablePositive831858 - 83321949941.4
phosphoglucomutase (alpha-d-glucose-1,6-bisphosphate-dependent)DBAC_RS03860Not AvailablePositive833276 - 83491958573.1
hydrogenase nickel incorporation protein hypbDBAC_RS03865Not AvailableNegative834992 - 83564823910.6
hydrogenase maturation nickel metallochaperone hypaDBAC_RS03870Not AvailableNegative835662 - 83601513140.2
hypothetical proteinDBAC_RS03875Not AvailableNegative836032 - 83636112205.4
lysm peptidoglycan-binding domain-containing proteinDBAC_RS03880Not AvailableNegative836379 - 83811263312.8
cbs domain-containing proteinDBAC_RS03885Not AvailablePositive838244 - 83889724424.8
pyrimidine/purine nucleoside phosphorylaseDBAC_RS03890Not AvailableNegative839002 - 83931611449.9
m23 family metallopeptidaseDBAC_RS03895Not AvailableNegative839439 - 84074647638.1

Displaying genes 791 – 800 of 3541 in total

Metabolites

1681 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001462ubiquinone-0C9H10O4Chemical structure of ubiquinone-0605-94-7
Average182.1733Da
Monoisotopic182.057908808Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da

Displaying 1–10 of 1681 metabolites

Health Effects

No health effects information available for this bacterium.