Tsukamurella paurometabola DSM 20162

Gram-positiveRodNon-motileObligate aerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Tsukamurellaceae

Genus

Tsukamurella

Description

Tsukamurella paurometabola (strain ATCC 8368 / DSM 20162 / JCM 10117 / NBRC 16120 / NCTC 13040) is an aerobic, weakly acid-fast, pleomorphic, Gram-positive bacterium isolated from mycetomes and ovaries of bed bugs (Cimex lectularius) and also found in soil and sludge. It is a member of the nocardioform actinomycetes and is closely related to the genus Mycobacterium. This organism has been isolated from cases of systemic infection, usually in association with other diseases. Cases of human infection with T. paurometabola are infrequent, nevertheless diagnosis rates are increasing, typically in patients with underlying predisposing factors including immunosupression, chronic pathology and indwelling foreign bodies. Thus it is a novel pathogen causing catheter-related bacteremia in patients with cancer. (Adapted from: http://www.ncbi.nlm.nih.gov/sites/genomeprj?Db=genomeprj&cmd=ShowDetailView&TermToSearch=29399 and PMID: 1571430). (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyTsukamurellaceae
GenusTsukamurella
SpeciesTsukamurella paurometabola
StrainDSM 20162

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Tsukamurella paurometabola DSM 20162
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsObligate aerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs
SporulationNonsporulating
Energy sourceChemoorganotroph
PathogenicityYes

Genome Summary

Tsukamurella paurometabola DSM 20162, complete sequence.

Gene Summary

Adenine Count

690645 bp

Thymine Count

692841 bp

Guanine Count

1501496 bp

Cytosine Count

1494936 bp

Genome Length

4379918 bp

Protein-coding Genes

4211 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinTPAU_RS12605Not AvailableNegative2611303 - 261182418669.2
heme o synthaseTPAU_RS12610Not AvailableNegative2611936 - 261291635299.9
transketolaseTPAU_RS12615Not AvailablePositive2613278 - 261537774186.2
transaldolaseTPAU_RS12620Not AvailablePositive2615382 - 261648839265.2
glucose-6-phosphate dehydrogenaseTPAU_RS12625Not AvailablePositive2616496 - 261803457250.6
glucose-6-phosphate dehydrogenase assembly protein opcaTPAU_RS12630Not AvailablePositive2618031 - 261894832391.3
6-phosphogluconolactonaseTPAU_RS12635Not AvailablePositive2618945 - 261970926825.2
voc family proteinTPAU_RS12640Not AvailableNegative2619717 - 262040923788.1
wxg100 family type vii secretion targetTPAU_RS12645Not AvailableNegative2620427 - 262135630683.9
type vii secretion targetTPAU_RS12650Not AvailableNegative2621353 - 262165810719.4

Displaying genes 2551 – 2560 of 4368 in total

Metabolites

900 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da

Displaying 1–10 of 900 metabolites

Health Effects

No health effects information available for this bacterium.