Halorhabdus utahensis DSM 12940

Gram-negativeRodNon-motileAerobic

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Haloarculaceae

Genus

Halorhabdus

Description

Halorhabdus utahensis (strain DSM 12940 / JCM 11049 / AX-2) is a pleomorphic, aerobic, extremely halophilic archaeon, originally isolated from sediment of Great Salt Lake, Utah, USA. H.utahensis grows optimally at 27% (w/v) NaCl at temperatures between 17 and 55 degrees Celsius, with optimal growth occurring at 50 degrees Celsius. It is able to grow over a pH range of 5.5-8.5 at 30 degrees Celsius in presence of 27% NaCl, and its optimal pH is between 6.7 and 7.1. Only a few carbohydrates (such as glucose, xylose and fructose) supporte its growth. H.utahensis only uses a limited range of substrates for growth and is unique in its inability to utilize yeast extract or peptone for growth. The polar lipids present comprise the corresponding diether derivatives of phosphatidyl glycerol (PG), methylatedphosphatidyl glycerophosphate (MePGP), a triglycosyl glycolipid (TGD) and a sulfated triglycosyl glycolipid (S-TGD). This composition indicates that H.utahensis is a member of the family Halobacteriaceae, but is chemically distinctive from any other aerobic, halophilic species and constitutes a member of a novel taxon within this family. H.utahensis is susceptible to bacitracin and novobiocin but resistant to ampicillin, carbenicillin, chloramphenicol, erythromycin, gentamicin, kanamycin, nalidixic acid, neomycin, penicillin, polymyxins, rifampicin, streptomycin and tetracycline. (Adaptated from PMID: 10826803). (HAMAP: HALUD)

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloarculaceae
GenusHalorhabdus
SpeciesHalorhabdus utahensis
StrainDSM 12940

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Halorhabdus utahensis DSM 12940
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature50
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Halorhabdus utahensis DSM 12940, complete sequence.

Gene Summary

Adenine Count

582913 bp

Thymine Count

573419 bp

Guanine Count

980610 bp

Cytosine Count

979853 bp

Genome Length

3116795 bp

Protein-coding Genes

2996 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aec family transporterHUTA_RS03015Not AvailableNegative616093 - 61700131393.2
ubix family flavin prenyltransferaseHUTA_RS03020Not AvailableNegative617105 - 61767120344.0
aconitase x swivel domain-containing proteinHUTA_RS03025Not AvailableNegative617674 - 61810214681.8
aconitase xHUTA_RS03030Not AvailableNegative618102 - 61928041888.6
ubid family decarboxylaseHUTA_RS03035Not AvailableNegative619297 - 62059847590.7
alanyl-trna editing proteinHUTA_RS03040Not AvailablePositive620732 - 62145726926.8
hypothetical proteinHUTA_RS03045Not AvailableNegative621528 - 62199816431.6
hemk2/mtq2 family protein methyltransferaseHUTA_RS03050Not AvailableNegative622094 - 62270821210.5
16s ribosomal rna methyltransferase aHUTA_RS03055Not AvailableNegative622701 - 62357931087.1
duf655 domain-containing proteinHUTA_RS03060Not AvailableNegative623579 - 62414521480.8

Displaying genes 641 – 650 of 3060 in total

Metabolites

217 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001462ubiquinone-0C9H10O4Chemical structure of ubiquinone-0605-94-7
Average182.1733Da
Monoisotopic182.057908808Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001808corynebactinC39H42N6O18Chemical structure of corynebactinNot available
Average882.789Da
Monoisotopic882.2555585Da

Displaying 1–10 of 217 metabolites

Health Effects

No health effects information available for this bacterium.