Chlorobaculum parvum NCIB 8327

RodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Chlorobiota

Class

Chlorobiia

Order

Chlorobiales

Family

Chlorobiaceae

Genus

Chlorobaculum

Description

Chlorobaculum parvum (formerly known as both Chlorobium vibrioforme subsp. thiosulfatophilum and Chlorobium limicola subsp. thiosulfatophilum) is a green sulfur bacteria. Grows as single, non-motile cells which are curved rods or vibrioid, approximately 1um wide. The photosynthetic pigments are BChl d with chlorobactene as the major carotenoid. Photoautotrophic growth occurs with sulfide, sulfur and thiosulfate as photosynthetic electron donors; molecular hydrogen may be used by some strains. In the presence of sulfide and bicarbonate, some simple organic compounds are photoassimilated. Vitamin B12 may be required for growth. Brackish water and marine bacteria that require at least 1% NaCl. This is the type strain (adapted from PubMed 12892110). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumChlorobiota
ClassChlorobiia
OrderChlorobiales
FamilyChlorobiaceae
GenusChlorobaculum
SpeciesChlorobaculum parvum
StrainNCIB 8327

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourcePhotolithotroph
PathogenicityNo

Genome Summary

Chlorobaculum parvum NCIB 8327, complete sequence.

Gene Summary

Adenine Count

507128 bp

Thymine Count

504809 bp

Guanine Count

639363 bp

Cytosine Count

637949 bp

Genome Length

2289249 bp

Protein-coding Genes

2107 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinCPAR_RS02790Not AvailablePositive587881 - 5881269009.53
phosphoenolpyruvate carboxylaseCPAR_RS02795Not AvailableNegative588326 - 591085104493.0
photosystem p840 reaction-center cytochrome c-551CPAR_RS02800Not AvailablePositive591302 - 59192222859.1
preq(1) synthaseCPAR_RS02805Not AvailableNegative592004 - 59235413260.8
class i sam-dependent methyltransferaseCPAR_RS02810Not AvailablePositive592525 - 59324727031.1
duf4905 domain-containing proteinCPAR_RS02815Not AvailablePositive593244 - 59409530896.6
tyrosine-type recombinase/integraseCPAR_RS02820Not AvailablePositive594109 - 59511938633.7
hpf/raia family ribosome-associated proteinCPAR_RS02825Not AvailablePositive595209 - 59553512257.4
hpr(ser) kinase/phosphataseCPAR_RS02830Not AvailablePositive595613 - 59664439207.3
peptide-binding proteinCPAR_RS02835Not AvailablePositive596631 - 59840666509.2

Displaying genes 571 – 580 of 2165 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

114 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da

Displaying 1–10 of 114 metabolites

Health Effects

No health effects information available for this bacterium.