Candidatus Riesia pediculicola USDA

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Candidatus Riesia

Description

Riesia pediculicola USDA. Riesia pediculicola USDA will be used for comparative analysis with other insect symbiotic bacteria (NCBI BioProject: bp_list[1])

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCandidatus Riesia
SpeciesCandidatus Riesia pediculicola
StrainUSDA

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Candidatus Riesia pediculicola USDA
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipSymbiotic
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Riesia pediculicola USDA, complete sequence.

Gene Summary

Adenine Count

202039 bp

Thymine Count

208750 bp

Guanine Count

82138 bp

Cytosine Count

81463 bp

Genome Length

574390 bp

Protein-coding Genes

468 genes

Non-Coding Genes

41 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Trna-asnNot AvailableNot AvailablePositive564833 - 564904Not Available
single-stranded dna-binding proteinRIEPE_RS02545Not AvailableNegative564970 - 56545518416.6
pfkb family carbohydrate kinaseRIEPE_RS02550Not AvailableNegative565625 - 56703754034.0
multifunctional trna nucleotidyltransferase/2',3'-cyclic phosphodiesterase/2' nucleotidase/2'phosphataseRIEPE_RS02555Not AvailablePositive567533 - 56878648562.0
dihydroneopterin aldolaseRIEPE_RS02560Not AvailableNegative568788 - 56914113901.1
trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex transferase subunit tsadRIEPE_RS02565Not AvailableNegative569196 - 57022737768.1
30s ribosomal protein s21RIEPE_RS02570Not AvailablePositive570427 - 5706729832.16
dna primaseRIEPE_RS02575Not AvailablePositive570706 - 57246669176.5
rna polymerase sigma factor rpodRIEPE_RS02580Not AvailablePositive572571 - 57439070242.0
3-methyl-2-oxobutanoate hydroxymethyltransferaseRIEPE_RS02595Not AvailablePositive117 - 97431401.0

Displaying genes 501 – 510 of 518 in total

Metabolites

1522 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002198beta-D-ribofuranoseC5H10O5Chemical structure of beta-D-ribofuranose50-69-1
Average150.1299Da
Monoisotopic150.05282343Da
BASm0002644(9Z,12Z)-octadecadienoyl-CoAC39H62N7O17P3SChemical structure of (9Z,12Z)-octadecadienoyl-CoA6709-57-5
Average1025.94Da
Monoisotopic1025.31577Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm00029834-CDP-2-C-methyl-D-erythritolC14H23N3O14P2Chemical structure of 4-CDP-2-C-methyl-D-erythritolNot available
Average519.294Da
Monoisotopic519.0666236Da
BASm00030584-CDP-2-C-methyl-D-erythritol 2-phosphateC14H22N3O17P3Chemical structure of 4-CDP-2-C-methyl-D-erythritol 2-phosphateNot available
Average597.257Da
Monoisotopic597.0184016Da
BASm00034972-C-methyl-D-erythritol 2,4-cyclic diphosphateC5H10O9P2Chemical structure of 2-C-methyl-D-erythritol 2,4-cyclic diphosphate143488-44-2
Average276.075Da
Monoisotopic275.9800049Da

Displaying 1–10 of 1522 metabolites

Health Effects

No health effects information available for this bacterium.