Candidatus Riesia pediculicola USDA

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Candidatus Riesia

Description

Riesia pediculicola USDA. Riesia pediculicola USDA will be used for comparative analysis with other insect symbiotic bacteria (NCBI BioProject: bp_list[1])

Taxonomy

Kingdom	Pseudomonadati
Phylum	Pseudomonadota
Class	Gammaproteobacteria
Order	Enterobacterales
Family	Enterobacteriaceae
Genus	Candidatus Riesia
Species	Candidatus Riesia pediculicola
Strain	USDA

Profile

Physiology
Gram staining properties	Negative
Shape	Rod
Mobility	Not Available
Flagellar presence	Not Available
Number of membranes	Not Available

Image source: Wikipedia/Wikimedia

Ecology, Host, and Life Cycle
Oxygen requirements	Not Available
Optimal temperature	Not Available
Temperature range	Mesophilic
Habitat	HostAssociated
Biotic relationship	Symbiotic
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Not Available
Energy source	Not Available
Pathogenicity	Not Available

Genome Summary

Candidatus Riesia pediculicola USDA, complete sequence.

NC_014109.1 NC_013962.1

Gene Summary

Adenine Count

202039 bp

Thymine Count

208750 bp

Guanine Count

82138 bp

Cytosine Count

81463 bp

Genome Length

574390 bp

Protein-coding Genes

468 genes

Non-Coding Genes

41 genes

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
ribonuclease iii	RIEPE_RS01370	Not Available	Positive	318204 - 318932	28184.1
pyridoxine 5'-phosphate synthase	RIEPE_RS01375	Not Available	Positive	319095 - 319853	28891.7
holo-acp synthase	RIEPE_RS01380	Not Available	Positive	319810 - 320214	15633.4
4fe-4s binding protein	RIEPE_RS02710	Not Available	Negative	320235 - 320435	7805.8
nucleoside deaminase	RIEPE_RS01390	Not Available	Positive	320546 - 321061	19708.2
nad+ synthase	RIEPE_RS01395	Not Available	Positive	321220 - 322854	63241.5
serine hydroxymethyltransferase	RIEPE_RS01400	Not Available	Positive	323012 - 324271	47085.4
3-phenylpropionate mfs transporter	RIEPE_RS01405	Not Available	Positive	324321 - 325481	44370.3
inositol monophosphatase family protein	RIEPE_RS01410	Not Available	Negative	325538 - 326422	34357.2
23s rrna (adenine(2503)-c(2))-methyltransferase rlmn	RIEPE_RS01415	Not Available	Positive	327123 - 328193	41382.8

Displaying genes 271 – 280 of 518 in total

Pathways

1072 pathways

2,3-Dihydroxybenzoate Biosynthesis

Lysine Biosynthesis

Palmitate Biosynthesis

Fatty Acid Elongation (Saturated)

tRNA Charging

Glycine Biosynthesis

Gluconeogenesis from L-Malic Acid

Fructose Metabolism

Show All 1072 Pathways

Metabolite ID	Metabolite name	CAS number	Average mass Monoisotopic mass
BASm0000260	3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5	Not available	Average405.556Da Monoisotopic405.264647871Da
BASm0000989	GlycerolC3H8O3	`56-81-5`	Average92.0938Da Monoisotopic92.04734412Da
BASm0001225	dodecanoateC12H23O2	Not available	Average199.3098Da Monoisotopic199.169805Da
BASm0001865	diphosphateHO7P2	Not available	Average174.95Da Monoisotopic174.9213971Da
BASm0002198	beta-D-ribofuranoseC5H10O5	`50-69-1`	Average150.1299Da Monoisotopic150.05282343Da
BASm0002644	(9Z,12Z)-octadecadienoyl-CoAC39H62N7O17P3S	`6709-57-5`	Average1025.94Da Monoisotopic1025.31577Da
BASm0002963	meso-2,6-diaminoheptanedioateC7H14N2O4	`922-54-3`	Average190.1971Da Monoisotopic190.0953569Da
BASm0002983	4-CDP-2-C-methyl-D-erythritolC14H23N3O14P2	Not available	Average519.294Da Monoisotopic519.0666236Da
BASm0003058	4-CDP-2-C-methyl-D-erythritol 2-phosphateC14H22N3O17P3	Not available	Average597.257Da Monoisotopic597.0184016Da
BASm0003497	2-C-methyl-D-erythritol 2,4-cyclic diphosphateC5H10O9P2	`143488-44-2`	Average276.075Da Monoisotopic275.9800049Da

Displaying 1–10 of 1522 metabolites

Health Effects

No health effects information available for this bacterium.