Pseudomonas yamanorum str. LBUM636

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas yamanorum
StrainLBUM636

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas yamanorum str. LBUM636
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas yamanorum strain LBUM636 chromosome, complete genome.

Gene Summary

Adenine Count

1350875 bp

Thymine Count

1350026 bp

Guanine Count

2079745 bp

Cytosine Count

2076189 bp

Genome Length

6856835 bp

Protein-coding Genes

6060 genes

Non-Coding Genes

226 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type vi secretion system contractile sheath small subunitAK972_RS14695Not AvailableNegative3149315 - 31494825967.37
glycosyltransferase family 39 proteinAK972_RS14700Not AvailableNegative3150015 - 315163759552.6
udp-glucose/gdp-mannose dehydrogenase family proteinAK972_RS14705Not AvailableNegative3151641 - 315302050846.0
4-amino-4-deoxy-l-arabinose-phosphoundecaprenol flippase subunit arnfAK972_RS14710Not AvailableNegative3153017 - 315343014401.0
4-amino-4-deoxy-l-arabinose-phosphoundecaprenol flippase subunit arneAK972_RS14715Not AvailableNegative3153427 - 315377412881.4
lipid iv(a) 4-amino-4-deoxy-l-arabinosyltransferaseAK972_RS14720Not AvailableNegative3153771 - 315542662153.9
4-deoxy-4-formamido-l-arabinose- phosphoundecaprenol deformylaseAK972_RS14725Not AvailableNegative3155423 - 315630732611.1
bifunctional udp-4-amino-4-deoxy-l-arabinose formyltransferase/udp-glucuronic acid oxidase arnaAK972_RS14730Not AvailableNegative3156307 - 315829874283.6
undecaprenyl-phosphate 4-deoxy-4-formamido-l-arabinose transferaseAK972_RS14735Not AvailableNegative3158295 - 315932938123.2
m949_rs01915 family surface polysaccharide biosynthesis proteinAK972_RS14740Not AvailablePositive3159801 - 316058929340.4

Displaying genes 2981 – 2990 of 6286 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

6 records
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Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002981N(6)-hydroxy-L-lysineC6H14N2O3Chemical structure of N(6)-hydroxy-L-lysineNot available
Average162.189Da
Monoisotopic162.1004423Da
BASm0003212N(6)-acetyl-N(6)-hydroxy-L-lysineC8H16N2O4Chemical structure of N(6)-acetyl-N(6)-hydroxy-L-lysineNot available
Average204.226Da
Monoisotopic204.111007003Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003702L-methionine (R)-S-oxideC5H11NO3SChemical structure of L-methionine (R)-S-oxideNot available
Average165.211Da
Monoisotopic165.045963913Da
BASm0004512N(2)-citryl-N(6)-acetyl-N(6)-hydroxy-L-lysineC14H19N2O10Chemical structure of N(2)-citryl-N(6)-acetyl-N(6)-hydroxy-L-lysineNot available
Average375.312Da
Monoisotopic375.1056156Da

Displaying 1–6 of 6 metabolites

Health Effects

No health effects information available for this bacterium.