Rufibacter tibetensis str. strain 1351

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Rufibacter

Description

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusRufibacter
SpeciesRufibacter tibetensis
Strainstrain 1351

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rufibacter tibetensis strain 1351 plasmid 1, complete sequence.

Gene Summary

Adenine Count

58315 bp

Thymine Count

59956 bp

Guanine Count

56601 bp

Cytosine Count

60566 bp

Genome Length

235438 bp

Protein-coding Genes

164 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aspartate aminotransferase family proteinDC20_RS12495Q07907Negative3056995 - 305813140876.2
n-acetyl-gamma-glutamyl-phosphate reductaseDC20_RS12500A6L849Negative3058349 - 305934136226.2
argininosuccinate synthaseDC20_RS12505Q60174Negative3059328 - 306052444452.9
n-6 dna methylaseDC20_RS12510Not AvailableNegative3060655 - 306119720229.4
amidohydrolase family proteinDC20_RS12515Not AvailableNegative3062108 - 3065392120850.0
susc/raga family tonb-linked outer membrane proteinDC20_RS12520Not AvailablePositive3066019 - 3069234117291.0
susd/ragb family nutrient-binding outer membrane lipoproteinDC20_RS12525Not AvailablePositive3069245 - 307067251984.4
abc transporter atp-binding proteinDC20_RS12530Q9FNU2Negative3070977 - 307279767140.4
sodium:solute symporterDC20_RS12535Not AvailableNegative3072982 - 307445454232.6
sodium:solute symporterDC20_RS12540Q5E733Negative3074664 - 307613655217.4

Displaying genes 2651 – 2660 of 4402 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

12 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001650N-acetyl-9-O-acetylneuraminateC13H20NO10Chemical structure of N-acetyl-9-O-acetylneuraminateNot available
Average350.301Da
Monoisotopic350.109269428Da
BASm0001767oxalateC2O4Chemical structure of oxalateNot available
Average88.019Da
Monoisotopic87.979658488Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002131(3S)-hydroxy-3-methylglutaryl-CoAC27H39N7O20P3SChemical structure of (3S)-hydroxy-3-methylglutaryl-CoANot available
Average906.62Da
Monoisotopic906.1183419Da
BASm0002487L-galactonateC6H11O7Chemical structure of L-galactonateNot available
Average195.1473Da
Monoisotopic195.0504777Da
BASm0003333(2R)-3-phosphoglycerateC3H4O7PChemical structure of (2R)-3-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm00043012-O-(4-deoxy-beta-L-threo-hex-4-enopyranuronosyl)-alpha-L-rhamnoseC12H17O10Chemical structure of 2-O-(4-deoxy-beta-L-threo-hex-4-enopyranuronosyl)-alpha-L-rhamnoseNot available
Average321.259Da
Monoisotopic321.082720327Da
BASm00057494-O-(beta-L-arabinofuranosyl)-(2S,4S)-4-hydroxyprolineC10H17NO7Chemical structure of 4-O-(beta-L-arabinofuranosyl)-(2S,4S)-4-hydroxyprolineNot available
Average263.246Da
Monoisotopic263.1005019Da

Displaying 1–10 of 12 metabolites

Health Effects

No health effects information available for this bacterium.