Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2

Gram-negative

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Genus

Candidatus Azobacteroides

Description

Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2. Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 was isolated from a single cell of the protist Pseudotrichonympha grassii which resides in the termite gut. The genome sequence of this organism will provide information on the proteins involved in endosymbiosis. (NCBI BioProject: bp_list[1])

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSpecialized
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2

Gene Summary

Adenine Count

11544 bp

Thymine Count

12504 bp

Guanine Count

6833 bp

Cytosine Count

6679 bp

Genome Length

37560 bp

Protein-coding Genes

50 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
methionyl-trna formyltransferaseCFPG_RS00880Not AvailableNegative195171 - 19614536302.3
5s ribosomal rnaNot AvailableNot AvailablePositive196485 - 196593Not Available
23s ribosomal rnaNot AvailableNot AvailablePositive196684 - 199579Not Available
sigma-54 interaction domain-containing proteinCFPG_RS00895Not AvailableNegative200111 - 20133747197.9
duf5606 domain-containing proteinCFPG_RS00900Not AvailableNegative201459 - 20189916988.8
dephospho-coa kinaseCFPG_RS00905Not AvailableNegative201912 - 20249622243.1
hypothetical proteinCFPG_RS05440Not AvailableNegative202816 - 2029415042.86
preprotein translocase subunit yajcCFPG_RS00910Not AvailableNegative203423 - 20376112503.7
glutamate--trna ligaseCFPG_RS00915Not AvailablePositive203853 - 20533757265.1
nadh peroxidaseCFPG_RS00920Not AvailablePositive205867 - 20641820918.0

Displaying genes 231 – 240 of 1013 in total

Metabolites

118 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0002759dTDP-beta-L-rhamnoseC16H24N2O15P2Not availableNot available
Average546.316Da
Monoisotopic546.066289237Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm00029834-CDP-2-C-methyl-D-erythritolC14H23N3O14P2Chemical structure of 4-CDP-2-C-methyl-D-erythritolNot available
Average519.294Da
Monoisotopic519.0666236Da
BASm00030584-CDP-2-C-methyl-D-erythritol 2-phosphateC14H22N3O17P3Chemical structure of 4-CDP-2-C-methyl-D-erythritol 2-phosphateNot available
Average597.257Da
Monoisotopic597.0184016Da
BASm0003462(2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinateC13H19N4O12PChemical structure of (2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinate3031-95-6
Average454.2833Da
Monoisotopic454.0737086Da
BASm00034972-C-methyl-D-erythritol 2,4-cyclic diphosphateC5H10O9P2Chemical structure of 2-C-methyl-D-erythritol 2,4-cyclic diphosphate143488-44-2
Average276.075Da
Monoisotopic275.9800049Da
BASm0003645UDP-4-amino-4-deoxy-beta-L-arabinoseC14H22N3O15P2Chemical structure of UDP-4-amino-4-deoxy-beta-L-arabinoseNot available
Average534.2831Da
Monoisotopic534.0526151Da
BASm0003763(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphateC11H12NO6PChemical structure of (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphateNot available
Average285.1898Da
Monoisotopic285.0402236Da

Displaying 1–10 of 118 metabolites

Health Effects

No health effects information available for this bacterium.