Corynebacterium urealyticum DSM 7109

Gram-positiveRodNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Corynebacteriaceae

Genus

Corynebacterium

Description

Bacteria from the genus Corynebacterium are Gram-positive, nonmotile rods. C.urealyticum is a strictly aerobic, lipid-requiring, urealytic bacterium of the human skin flora that causes urinary tract infections; strain DSM 7109 was recovered from a patient with alkaline-encrusted cystitis. Metabolic analysis of the lipid-requiring phenotype revealed the absence of a fatty acid synthase gene and the presence of a beta-oxidation pathway along with a large repertoire of auxillary genes for the degradation of exogenous fatty acids. A urease locus may play a pivotal role in virulence of C. urealyticum by the alkalinization of human urine and the formation of struvite stones. Multidrug resistance in DSM 7109 is mediated by transposable elements, conferring resistances to macrolides, lincosamides, ketolides, aminoglycosides, chloramphenicol, and tetracycline (modified from PubMed 18367281). (EBI Integr8)

Taxonomy

Kingdom	Bacillati
Phylum	Actinomycetota
Class	Actinomycetes
Order	Mycobacteriales
Family	Corynebacteriaceae
Genus	Corynebacterium
Species	Corynebacterium urealyticum
Strain	DSM 7109

Profile

Physiology
Gram staining properties	Positive
Shape	Rod
Mobility	No
Flagellar presence	Yes
Number of membranes	1

AI-generated image based on bacteria physiology

Ecology, Host, and Life Cycle
Oxygen requirements	Aerobe
Optimal temperature	37
Temperature range	Mesophilic
Habitat	HostAssociated
Biotic relationship	Free living
Host(s)	Not Available
Cell arrangement	Singles
Sporulation	Nonsporulating
Energy source	Chemoorganotroph
Pathogenicity	Yes

Genome Summary

Corynebacterium urealyticum DSM 7109, complete sequence.

NC_010545.1

Gene Summary

Adenine Count

428363 bp

Thymine Count

420167 bp

Guanine Count

757668 bp

Cytosine Count

763021 bp

Genome Length

2369219 bp

Protein-coding Genes

1990 genes

Non-Coding Genes

77 genes

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
bifunctional copper resistance protein copd/cytochrome c oxidase assembly protein	CU_RS07015	Not Available	Negative	1643746 - 1646046	83915.6
Trna-arg	Not Available	Not Available	Positive	1646150 - 1646223	Not Available
mycolate reductase	CU_RS07025	Not Available	Positive	1646395 - 1647240	29980.1
oligoribonuclease	CU_RS07030	Not Available	Positive	1647271 - 1647900	23558.0
Trna-his	Not Available	Not Available	Positive	1648083 - 1648158	Not Available
aldehyde dehydrogenase family protein	CU_RS10630	Not Available	Negative	1648215 - 1649418	43302.1
pldc n-terminal domain-containing protein	CU_RS07050	Not Available	Positive	1649737 - 1650003	9891.31
heavy-metal-associated domain-containing protein	CU_RS07055	Not Available	Negative	1650000 - 1650209	7011.03
squalene/phytoene synthase family protein	CU_RS07060	Not Available	Positive	1650361 - 1651344	34773.9
ig-like domain-containing protein	CU_RS07065	Not Available	Negative	1651354 - 1652577	43776.7

Displaying genes 1441 – 1450 of 2067 in total

Pathways

1196 pathways

2,3-Dihydroxybenzoate Biosynthesis

Biosynthesis of Siderophore Group Nonribosomal Peptides

Cysteine Biosynthesis

Glycine Biosynthesis

Show All 1196 Pathways

Metabolite ID	Metabolite name	CAS number	Average mass Monoisotopic mass
BASm0000387	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6	Not available	Average455.432Da Monoisotopic455.1564286Da
BASm0001865	diphosphateHO7P2	Not available	Average174.95Da Monoisotopic174.9213971Da
BASm0002305	(S)-2-ethyl-2-hydroxy-3-oxobutanoateC6H9O4	Not available	Average145.135Da Monoisotopic145.0506324Da
BASm0002307	(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4	Not available	Average147.1491Da Monoisotopic147.06573384Da
BASm0002458	1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranosideC14H25NO11	Not available	Average383.35Da Monoisotopic383.142760629Da
BASm0002751	(S)-4-amino-5-oxopentanoateC5H9NO3	Not available	Average131.1299Da Monoisotopic131.0582432Da
BASm0002826	(2R)-3-phospho-glyceroyl phosphateC3H4O10P2	Not available	Average262.005Da Monoisotopic261.9301646Da
BASm0002833	FMNH2C17H21N4O9P	`5666-16-0`	Average456.3438Da Monoisotopic456.1046148Da
BASm0002858	all-trans-undecaprenyl phosphateC55H89O4P	Not available	Average845.288Da Monoisotopic844.6509455Da
BASm0002909	O-acetyl-L-homoserineC6H11NO4	`7540-67-2`	Average161.1558Da Monoisotopic161.0688078Da