Amycolatopsis marina

aerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Pseudonocardiales

Family

Pseudonocardiaceae

Genus

Amycolatopsis

Description

Amycolatopsis marina is a Gram-positive bacterium that demonstrates aerobic metabolism and thrives optimally at a temperature of 29.0°C. This microbial species belongs to the genus Amycolatopsis, which is known for its ability to produce various bioactive compounds. As a member of the Actinobacteria phylum, A. marina exhibits the characteristic high G+C content in its DNA, which is a hallmark of many actinobacteria and is often associated with their complex secondary metabolite production. The aerobic nature of A. marina indicates that it relies on oxygen for its growth and metabolic processes, which may influence its ecological niches and interactions with other microorganisms in its environment. Given its optimal growth temperature, A. marina may be well-suited to marine or estuarine environments where temperatures are moderate and the presence of oxygen is abundant. Furthermore, the ability of A. marina to thrive in oxygen-rich conditions suggests potential roles in biogeochemical cycles, particularly in nutrient cycling within aquatic ecosystems. The ecological implications of its metabolic activities could contribute to the breakdown of organic matter or the production of compounds that influence microbial community dynamics in marine habitats, highlighting the importance of this bacterium in maintaining ecological balance.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusAmycolatopsis
SpeciesAmycolatopsis marina
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-positive
ShapeNot Available
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Amycolatopsis marina strain CGMCC 4.3568 genome assembly, contig:

Gene Summary

Adenine Count

1120190 bp

Thymine Count

1110911 bp

Guanine Count

2383839 bp

Cytosine Count

2405654 bp

Genome Length

7020699 bp

Protein-coding Genes

6665 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptidyl-prolyl cis-trans isomerase a (cyclophilin a)SAMN05216266_101625Not AvailablePositive622399 - 62295919915.1
membrane associated serine protease, rhomboid familySAMN05216266_101626Not AvailablePositive623140 - 62409934351.5
ph domain-containing proteinSAMN05216266_101627Not AvailableNegative624131 - 62454714539.5
uncharacterised protein family (upf0233)SAMN05216266_101628Not AvailableNegative624632 - 6248989967.73
lpxtg-site transpeptidase (sortase) family proteinSAMN05216266_101629Not AvailablePositive625087 - 62612737663.5
hypothetical proteinSAMN05216266_101630Not AvailablePositive626127 - 6262825777.39
flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase ssud and methylene tetrahydromethanopterin reductase)SAMN05216266_101631Not AvailablePositive626279 - 62732536661.8
hypothetical proteinSAMN05216266_101632Not AvailableNegative627294 - 62769514670.2
ferredoxin--nadp+ reductaseSAMN05216266_101633Not AvailableNegative627846 - 62923450563.7
para-aminobenzoate synthetase component 2SAMN05216266_101634Not AvailablePositive629409 - 63004422462.7

Displaying genes 631 – 640 of 1830 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.